Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02053 ATGGCTTCTAAATTCTGGACACAGGGTGCTAGTGACTCTGAGGAGGAGGAGAGTGACATTGATAATGATGTTGAGACTGCAGTGGGTGAACCAACCAATGAAACTGCTAAAAGCAGATACCTGCAAGTTAGTGACACTGATACTGATACTGATGATGAGAAGCGGGTTGTTAGGTCAGCAAAAGACAAGCGTTTCGAAGAGATGTCATCTACAATTGACCAGATGAGGAATGCTATGAAGATTAATGACTGGGTGAGCTTGCAAGAGAGCTTTGATAAGATAAACAAGCAACTCGAGAAAGTCATGCGTATCACTGAATCTGAGAAGGTGCCTACTCTTTACATAAAGGCACTTGTGACGTTGGAAGACTTCCTAGCACAGGCTTTGGCAAATAAGGATGCCAAAAAGAAGATGAGTAGCAGTAATGCTAAAGCATTGAACTCAATGAAGCAGAAATTGAAGAAGAATAATAAGCAATATGAGGATTTGATTACTAAATATAGAGAAAATCCTGAGAGTGAGGAGGACAAAGATGAAGACGAGACTGAGGAGGAGGATGAAAGTGAGGAGGAGGTAATTGAGGAGATTGATAAGATCCAAAAGTCAGATTCTGAAGATGACGTTCCAGATGGTGAGAAGCCAGATGCAACTGATACCCCTTGGGACCAAAAACTCAGCAAGAAAGACAGGCTTATGGATAGGCAATTTATGAAAGACCCTAGTGAGATCTCTTGGGACATGGTTAACAAGAAGTTCAAAGAGGTTGTGGCTGCGAGGGGCAGGAGGGGAACGGGAAGGTTTGAGCAGGTTGAGCAGCTTACCTTCTTAACAAAAGTTGCCAAAACTCCTGCACAGAAGTTGGAAATATTTTTCAGTGTTGTTTCTGCTCAATTTGATGTTAATCCTGGTTTAAATGGGTATATGCCTATTCATGTGTGGAAGAAATGCGTGCAGAATATGATGGTCATTCTTGATATTCTAGTGCAGTACCCAAACATAGTTGTTGATGATACACTGGAGCCTGATGAGAATGAAACTCAGAAGGGTACTGACCATAGTGGACCAATTCGGGTATGGGGAAACTTAGTTGCATTCCTAGAAAGAATTGATGCTGAGTTTTTCAAGAGCTTGCAGTGCATTGATCCTCATACTCGTGAATATGTTGAGAGACTTAGGGATGAGCCCACGTATCTGGCTCTTGCTCAGAATGTGCAGGATTATCTTGAAAGGGTTGGAGATTTTAAAGCTTCGTCAAAGGTAGCCCTTAAACGTGTTGAACTTATCTATTACAAACCACAGGAGGTTTACGATGCCATGAGGAAATTGGCTGAACTGACAGATGACAATAGTGGAGAGGTGGATGATGAGTCTAAAGGGTTTGAGGATACGAGGACTCCTACCGCATTTGTTGTAACTCCTGAGCTTGTTCCTCGAAAACCTACTTTCCCAGAGAATAGTAGGACACTAATGGACTTATTGGTGTCCCTGGTTTACAAGTATGGGGATGAGCGGACGAAGGCACGTGCTATGCTTTGTGATATATATCACCATGCTCTTCTGGATGAGTTCTCAACTGCGCGTGATCTTTTGCTCATGAGCCATTTGCAGGATAGTGTTCAGCTTATGGACATATCAACGCAGATACTCTTTAACAGGGCCATGTCACAGCTAGGTCTTTGTGCTTTTCGGGTTGGGCTGATTTCTGAGGCTCATGGCTGCCTCTCTGAATTATATTCTGGTGGAAGGGTGAAGGAGCTGCTTGCTCAAGGGGTCTCACAAAGTCGCTATCATGAGAAGACTCCAGAACAGGAAAGGTTGGAAAGGAGACGACAGATGCCATATCATATGCACATTAACCTCGAGCTCCTGGAATCAGTGCATCTTATATGTGCTATGCTTTTGGAAGTTCCCAACATTGCAGCTAATGACCATGATGCAAAGCGTAAAGTTATTAGTAAGACTTTCCGTCGCTTGCTTGAGGTCAGTGAGAAACAAACATTTACAGGTCCTCCTGAAAATGTCAGAGACCATGTTATGGCTGCTACAAGGGCCCTTAACAAGGGAGACTTCCATAAGAGTTATGATATTATCAAGTCGCTGGATGTCTGGAAATTTGTTAGAAATCGTGACAGGGTTCTGGAAATGCTCAAGGAAACGATCAAGGAGGAGGCTCTAAGGACTTACCTCTTTACCTTCTCTTCATCCTATGACTCTTTGAGCCTTGAGCAACTCACAAAAATGTTTGACCTCTATGTTCCTCGCATCCATAGCATAGTTAGTAGGATGATATTAAATGAGGAGCTGCATGCAAGCTTGGATGAACCGTCTGGCTGCATTATTTTCCAGGATGTAAAGCACTCTAGATTGCATGCTTTGGCATTCCAGTTTACGGAGAAGTTTTCTATCATTGCAGAGAGTAATGAAAGAGCAATGGAGGCAAGGATAGGTGGCGGTGGACTTGATCTTCCCCTAAGGCGACGAGATAGCCAGGATTATGCTGCTGCTGCTGCAACAACAGTTGGCGGGAGGTGGCAAGACTTGTCTACTGCTCAGACAAGGCAAGGCAGCGGTACCGGACGGGCAGGATATAGTATTGGCGGTGGAAGGCCTTTTACGTTGAGCCAAAGTGGCTACACAAGGGACCGAACAGGAAGAGGAGCAGGTGGAGGCTATCAGAGTACAAGATATCAAGACTCTGCATATGGTGGTTCAGGGAGGACAACTCAGGGTTCAGCACTCAGGGGAGCCCAGGTGGATGCATCTACTCGTATGGTTAGCCTTAAAGGAGTTCGTGCTTAA 2799 0.4434 MASKFWTQGASDSEEEESDIDNDVETAVGEPTNETAKSRYLQVSDTDTDTDDEKRVVRSAKDKRFEEMSSTIDQMRNAMKINDWVSLQESFDKINKQLEKVMRITESEKVPTLYIKALVTLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEDLITKYRENPESEEDKDEDETEEEDESEEEVIEEIDKIQKSDSEDDVPDGEKPDATDTPWDQKLSKKDRLMDRQFMKDPSEISWDMVNKKFKEVVAARGRRGTGRFEQVEQLTFLTKVAKTPAQKLEIFFSVVSAQFDVNPGLNGYMPIHVWKKCVQNMMVILDILVQYPNIVVDDTLEPDENETQKGTDHSGPIRVWGNLVAFLERIDAEFFKSLQCIDPHTREYVERLRDEPTYLALAQNVQDYLERVGDFKASSKVALKRVELIYYKPQEVYDAMRKLAELTDDNSGEVDDESKGFEDTRTPTAFVVTPELVPRKPTFPENSRTLMDLLVSLVYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDSVQLMDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLESVHLICAMLLEVPNIAANDHDAKRKVISKTFRRLLEVSEKQTFTGPPENVRDHVMAATRALNKGDFHKSYDIIKSLDVWKFVRNRDRVLEMLKETIKEEALRTYLFTFSSSYDSLSLEQLTKMFDLYVPRIHSIVSRMILNEELHASLDEPSGCIIFQDVKHSRLHALAFQFTEKFSIIAESNERAMEARIGGGGLDLPLRRRDSQDYAAAAATTVGGRWQDLSTAQTRQGSGTGRAGYSIGGGRPFTLSQSGYTRDRTGRGAGGGYQSTRYQDSAYGGSGRTTQGSALRGAQVDASTRMVSLKGVRA 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02053 932 MobiDBLite consensus disorder prediction 174 193 - -
Accr5g02053 932 MobiDBLite consensus disorder prediction 132 152 - -
Accr5g02053 932 MobiDBLite consensus disorder prediction 872 914 - -
Accr5g02053 932 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 862 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Accr5g02053 932 MobiDBLite consensus disorder prediction 28 43 - -
Accr5g02053 932 SUPERFAMILY "Winged helix" DNA-binding domain 710 786 IPR036390 -
Accr5g02053 932 Gene3D - 716 789 IPR036388 -
Accr5g02053 932 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 715 801 IPR000717 -
Accr5g02053 932 Coils Coil 143 170 - -
Accr5g02053 932 MobiDBLite consensus disorder prediction 890 914 - -
Accr5g02053 932 MobiDBLite consensus disorder prediction 166 232 - -
Accr5g02053 932 MobiDBLite consensus disorder prediction 1 55 - -
Accr5g02053 932 MobiDBLite consensus disorder prediction 194 232 - -
Accr5g02053 932 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 43 646 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Accr5g02053 932 ProSiteProfiles PCI domain profile. 614 786 IPR000717 -
Accr5g02053 932 MobiDBLite consensus disorder prediction 134 152 - -
Accr5g02053 932 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 927 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Accr5g02053 932 Pfam PCI domain 654 782 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02053 Accr-Chr5 46888854 46892752 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02053 1 931 Eukaryotic Initiation Factors Gene Family AT3G56150 66.667 0.0 1190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02053 K03252 - gmx:100781967 1410.59