Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02048 ATGAGGGGCAGAAGCTACAGTTACAGTCCCTCACCTCCAAGGGGTTATAGCAGAAGACGCCGCAGTCCTAGTCCTCGTGGTCGTTATGGAGGTCGCTATGGAGGCCGTGGTAGGGATTTGCCAGCTAGTCTTCTGGTTAGGAACCTTCACAGAGATTGCAGGTCAGAAGATCTACGAGGACCTTTTGGCCACTTTGGTCCTCTCAAGGACATTTACCTACCTCGAGATTATTATACTGGGGAGCCACGAGGATTTGGATTTGTCCAATTTGTGGATCCAGCTGATGCTGCAGATGCTAAATATCACATGGACGGTCAAATTCTACTTGGTCGTGAGTTGACTGTGGTGTTTGCTGAGGAAAACAGAAAGAAGCCTGCTGAAATGAGAGCAAGAGAGCGATACAGGAGCCGATCATATAGGAGGTCTCCACCTCGCTATTCTTACTCACCACGCCATGCACACACCTATTCTCACAGTCCACCGTATCCACCTTCTCCAAGACGAAGCCGTTATTCCAGGTCAATATCGCCAAGGGATCGGAGGTATAGGGAGCGATCATACTCCAGATCACCTTACAGGGAGCGATCATATTCCGGATCACCTTACAGGGAGCGATCACATTCAAGGAGCCCTAGTCAAAGCAGGAGCCGAAGTTTATACTAG 663 0.4962 MRGRSYSYSPSPPRGYSRRRRSPSPRGRYGGRYGGRGRDLPASLLVRNLHRDCRSEDLRGPFGHFGPLKDIYLPRDYYTGEPRGFGFVQFVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPAEMRARERYRSRSYRRSPPRYSYSPRHAHTYSHSPPYPPSPRRSRYSRSISPRDRRYRERSYSRSPYRERSYSGSPYRERSHSRSPSQSRSRSLY 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02048 220 MobiDBLite consensus disorder prediction 203 220 - -
Accr5g02048 220 MobiDBLite consensus disorder prediction 172 191 - -
Accr5g02048 220 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Accr5g02048 220 MobiDBLite consensus disorder prediction 1 36 - -
Accr5g02048 220 MobiDBLite consensus disorder prediction 124 139 - -
Accr5g02048 220 Gene3D - 38 153 IPR012677 -
Accr5g02048 220 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 113 IPR000504 GO:0003723
Accr5g02048 220 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 42 215 - -
Accr5g02048 220 MobiDBLite consensus disorder prediction 124 220 - -
Accr5g02048 220 SMART rrm1_1 43 116 IPR000504 GO:0003723
Accr5g02048 220 SUPERFAMILY RNA-binding domain, RBD 43 145 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02048 Accr-Chr5 46781434 46784394 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02048 3 105 Eukaryotic Initiation Factors Gene Family AT3G11400 35.185 7.30e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02048 K12900 - jre:108985117 197.593