Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02022 ATGGAGCTGGCTCTGAGCTTGGGAGATGCCCCTAAGGGCTTTCCTATACTGGACAAGGCCCCAAGAATGGCTAACAAGGAACCTGGTTTCTGCATATCTCTTGGTCAGAGTCTCGCCGAGAAAGTTTCAGAGCATGATAGTGTCCAAGATGAGACCAGAGCCTCCTCAGATCCGCCTCTTCAGCTTGACCTTCTTCCTTTCACGCCCATTCCTCGACCCCACCCACCTTCTTATCTTCGGATTCCTTGGCTCTCTGATTCCTTGGGATCTCAACGTTTCTCACCAGATGGGGGAGCGAAGGCGTTTGACGTCAACCGTGTGCCGGCGGCAGGAGCGGAGGAGGCAGATGACGGTACTCCACCGTCCTTGTCTCCTAATAGTGTATCGTCCTTTCACGTGGACTTCTACATGAGGAGTGGTAACGCTGGCAGTAAAAGCAAGAGAGAGCTTGATGATGATGGTGAGAGAACTAATTCCAGGGCCAGTGACGATGACGAGAACGGGTCGACCCGTAAGAAACTCAGACTCTCCAAGGAACAATCAGCTTTTCTTGAAGAGAGCTTCAAAGAACATTCTACTCTTAATCCTAAGCAGAAACTGGTTCTGGCTAAACAGTTAAATCTTCGCCCACGCCAAGTGGAAGTTTGGTTTCAAAACAGAAGGGCAAGGACAAAGTTGAAGCAGACGGAAGTAGATTGTGAGCATCTGAAGAGATGTTGTGAGACGCTGACGGATGAGAATAAGAGGTTGCAGAAGGAGCTGCAGGAACTAAGGGCTTTGAAGACGTCGCAGCCATTTTACATGCAGCTTCCGGCTACCACTCTAACAATGTGTCCCTCGTGTGAAAGGGTGGCCACCAACTCGTCGTCTTCTACCTCCGCCGTCACTATCCCGAACAACGCTTCTCAGGCGGCGGCGTCGCCACTCATGTCTCTCACCAACCCCAGAACAGTCACTCCCTTTGATTATGATCATAATGTCCAGCCTCATCGCACTCCTTCCTCATGA 1008 0.5089 MELALSLGDAPKGFPILDKAPRMANKEPGFCISLGQSLAEKVSEHDSVQDETRASSDPPLQLDLLPFTPIPRPHPPSYLRIPWLSDSLGSQRFSPDGGAKAFDVNRVPAAGAEEADDGTPPSLSPNSVSSFHVDFYMRSGNAGSKSKRELDDDGERTNSRASDDDENGSTRKKLRLSKEQSAFLEESFKEHSTLNPKQKLVLAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRCCETLTDENKRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNSSSSTSAVTIPNNASQAAASPLMSLTNPRTVTPFDYDHNVQPHRTPSS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02022 335 SMART HOX_1 169 231 IPR001356 GO:0003677
Accr5g02022 335 MobiDBLite consensus disorder prediction 144 174 - -
Accr5g02022 335 Gene3D - 175 225 - -
Accr5g02022 335 ProSitePatterns 'Homeobox' domain signature. 202 225 IPR017970 GO:0000981|GO:0006355
Accr5g02022 335 MobiDBLite consensus disorder prediction 316 335 - -
Accr5g02022 335 Pfam Homeodomain 171 225 IPR001356 GO:0003677
Accr5g02022 335 MobiDBLite consensus disorder prediction 139 174 - -
Accr5g02022 335 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 37 301 - -
Accr5g02022 335 SUPERFAMILY Homeodomain-like 161 228 IPR009057 -
Accr5g02022 335 FunFam Homeobox-leucine zipper protein 18 155 232 - -
Accr5g02022 335 Pfam Homeobox associated leucine zipper 227 261 IPR003106 GO:0006355|GO:0043565
Accr5g02022 335 Coils Coil 233 263 - -
Accr5g02022 335 SMART halz 227 270 IPR003106 GO:0006355|GO:0043565
Accr5g02022 335 CDD bZIP 220 259 - -
Accr5g02022 335 CDD homeodomain 171 228 IPR001356 GO:0003677
Accr5g02022 335 ProSiteProfiles 'Homeobox' domain profile. 167 227 IPR001356 GO:0003677
Accr5g02022 335 MobiDBLite consensus disorder prediction 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02022 Accr-Chr5 46582993 46584294 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02022 159 321 Homeobox Transcription Factor Family AT4G37790 67.665 1.25e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Accr5g02022 Homeodomain 3.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02022 K09338 - vvi:100265773 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr2g02524 2 60713466 60714786 Accr5g02022 5 46582993 46584294 CCT
Accr5g02022 5 46582993 46584294 Accr5g02022 5 46582993 46584294 ECH