Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02021 ATGGGGGAACGGACATCTGATGCGATGAACTTTGATTTGAATTTGGATCCCATCCTGGAGCCACCAGCCGACTCCATAGCCGGTGAACATGCGGTCTCTCTAGATGACTGGACCCAGCGATCTCTTCACCGAATTAATGAAGGACGTCGGTATAGGTCTCGGCTACAATGGAGATCACGGCATCTTCCTGTCTCACCCGATGCCCGGAGACATGATAATCCACCGCCTGAATCCCAAAATTTTCCGATGGAAATAAATCAATTTGTGGAGACCCCTGACATTGAGACTACCCTACAGGTTGGTCAGGACGGTTTTGAGGATGACCTAAGATCAGAGGAGGTACCAAAAGCATGTGAAAATAACAACACCTTAACGAGGGGCGAGGAGTTAGAGAAGAAGGATGATGTTGAAAAGGGTATTGGCGATGATGGGGGCTTTTTCGATTGTAATATATGTTTGGACCTTGCCAAGGATCCTGTTGTGACTTGTTGTGGTCATTTGTTTTGTTGGCCTTGCCTCTATCGATGGCTACATATGCACTCAGACGTCAAGGAATGTCCTGTTTGTAAGGGCGACGTGTCCTACAAAACGATCACCCCAATATATGGTCGTGGAAACAACAATGTTCAAGACCCTGAGGAGGATCCCACTCTTAAAGTCCCTCTTAGGCCACCCGCAAGGCGGGTTGAGGGTTTAAGACCAACAACCTCTGAGAGAAGTTCCATGGAGGAGATGATTAGGCGTCTCGGTGGAAGAGTTGATCTTTCTCGCGTTGTGGTTCGCCCGCACGACCCTACTGAAACCGTGCGTGAAGCAGCAGAGAGAACAAGAAATTTGCTAAACAGGTTTTTAACTTCTCGAGCAATTCGGAGAGAGCAAAATTTTGAAGCATCCCCCGATGATGCAGGATATTTAACGGGAAACAACATGAGTAATCTTGACGCAGGGGATAATCGGAGGCTGCAATCGATTCTGCTTCGAACAACACAGTCCCACCGAGCAACGCTTTCATCATTTCCCTCGGCTATAAGCTCGGCAGAGCGAGTGGTGGAGACATATTTCCGGACCCGGGCAGGAGCTAGAAACCAAGAACAAGCTTCACAGGTGGATGACAGAGATTCATATTCAAGCATTGCTGCTGTTATAAATTCAGAGAGTCAAGTGGTCACTGCCGTAGAAACTGATTCCACAGTGTCATTGTCCACGTCCTCTTCCAGAAGGAGAAACGATTCTTCTAGAGTTTCTGATGCAGATACTGGAGACTCTCGTGCTCCCAGGCCTAGGCGAAGAAGACGTTTACGTTGA 1305 0.4805 MGERTSDAMNFDLNLDPILEPPADSIAGEHAVSLDDWTQRSLHRINEGRRYRSRLQWRSRHLPVSPDARRHDNPPPESQNFPMEINQFVETPDIETTLQVGQDGFEDDLRSEEVPKACENNNTLTRGEELEKKDDVEKGIGDDGGFFDCNICLDLAKDPVVTCCGHLFCWPCLYRWLHMHSDVKECPVCKGDVSYKTITPIYGRGNNNVQDPEEDPTLKVPLRPPARRVEGLRPTTSERSSMEEMIRRLGGRVDLSRVVVRPHDPTETVREAAERTRNLLNRFLTSRAIRREQNFEASPDDAGYLTGNNMSNLDAGDNRRLQSILLRTTQSHRATLSSFPSAISSAERVVETYFRTRAGARNQEQASQVDDRDSYSSIAAVINSESQVVTAVETDSTVSLSTSSSRRRNDSSRVSDADTGDSRAPRPRRRRRLR 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02021 434 MobiDBLite consensus disorder prediction 393 408 - -
Accr5g02021 434 MobiDBLite consensus disorder prediction 409 425 - -
Accr5g02021 434 SMART ring_2 149 189 IPR001841 -
Accr5g02021 434 MobiDBLite consensus disorder prediction 393 434 - -
Accr5g02021 434 ProSiteProfiles Zinc finger RING-type profile. 149 190 IPR001841 -
Accr5g02021 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 203 IPR013083 -
Accr5g02021 434 CDD RING-HC_AtRMA-like 147 190 - -
Accr5g02021 434 MobiDBLite consensus disorder prediction 62 81 - -
Accr5g02021 434 Pfam Zinc finger, C3HC4 type (RING finger) 149 189 - -
Accr5g02021 434 ProSitePatterns Zinc finger RING-type signature. 164 173 IPR017907 -
Accr5g02021 434 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 123 349 IPR045103 GO:0005783|GO:0006511|GO:0061630
Accr5g02021 434 SUPERFAMILY RING/U-box 148 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02021 Accr-Chr5 46569760 46571064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02021 1 422 C3H Transcription Factor Family AT3G58030 47.439 8.95e-104 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02021 K10666 - pcin:129304364 570.466