Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02008 ATGGCGTCTAAAGGTCCGAGGTCCAAGATTGATCACGAGAGTAGAGCAAAGCGGCAAAAGGCACTTGAGGCTCCAAGGGAGCCTCGACGTCCTAAAACTCACTGGGATCATGTCATAGAAGAGATGGTGTGGTTATCGAAGGATTTTGAGTCAGAGAGGAAATGGAAATTAGCTCAGGCAAAGAAAGTTGCTTTAAGAGCTAGCAAGGGCATGTTAGATCCGGCTACAAGAGGTGAAAAGAAGATGAAGGAGGAAGAGCAGCGATTAAGGAAAGTTGCACTAAATATTTCAAAGGATGTTAAGAAATTTTGGACAAAAATAGAAAAGCTGGTTCTTTACAAGCATCAGATGGAGCTTGATGAGAAAAAGAAAAAGGCACTTGACAAACAGCTTGAGTTTCTTTTGGGTCAAACTGAAAGGTACTCAACCATGTTGGCAGAAAATCTTGTGGATGCTATTGAACCAGTTGAGAAACAGTCGCCAGAACATCATAGGAGTGCCCAATACAAAGGAGAAGATGAAGACGTTGTCAACAGATCTGATGAAGCTATTGCTGAGTTTCAGTCAGATCCTAATGACAATGATGAAGAATACGATGTGCAATCTGATGATGAATCGGAGGATGATGAGCAAACCCTCGAGGAAGATGAGGCTCTCATAACTGAAGAAGAAAGGCAAGAGGAGTTGGCGGCTTTGCATGACGAAGTTGATCTTCCTCTTGAGGAGTTACTGAAGCATTATTCTGGGGAGAAGGAACCAGCTAGTCATGAAAGTAGTCCAGAGCACAGCAATGATGATGATACAGAAGTCAGAGCTGGTAACGGAAATGAAAATGGAGACGGTAGTTTATCTATTAGCAAGCTTGGCTCAAGCAGCTCCAGCATGATCTCTGGTCGTCGTTGTGAAAAAAGTAATGGTGGTCTAACTACACCAGCAGAGAACATAGCCAGAGATAAGACCTGTCAATCTGAAAATCTTGTATATGACTTTAGTGATGAAGAGGAAGATGGGGACTTCTTGCTTGCCACAGAAGATAATGATGATGAAACAACCTTATCCGAGGAGGAAAAATTGGAAAAAATGGACGCAATTGCTCCAAAGGATGAGATTGCTTTATTACAAAGGGAGAGCGACATGCCTGTTGAGGAACTCCTTGCAATGTATAGAAAGTATTCCAGTGGCAAACATAGGGAAGATGAATCTGAAGATGCTGCTTCTTTGTCGGAAGATCTTTTGGATTCTCCACTGCATGAAGATGGAAGGAAGAAGGATCCTGCGGTTTCTGTGGATGGAGATGTCAAGCCTGTCGAGCACATGGCTATTGTACAGTCCCAGACTGAAGAACAACATTGGGAAGTTCCTCATGAAAATCCCGAGGGAAGGGATAGTGAAAATCTGATAGCAGATGCAGCAGCTGCTGCAAGATCAGCGCAACCTACTGGAAATACCTTCTCCACAACTAAAGTGCGCACAAAGTTCCCTTTTCTCCTCAAGTATCCTCTCCGTGAGTATCAACACATTGGATTAGATTGGCTTGTAACAATGTATGAGAAAAGGCTGAATGGGATTTTGGCAGATGAAATGGGACTTGGTAAAACAATTATGACTATAGCTTTGCTTGCACATCTTGCTTGTGAAAGAGGGATTTGGGGCCCACATCTCATTGTGGTACCAACTAGTGTCATGCTTAACTGGGAGACTGAATTTCTCAAATGGTGTCCTGCATTTAAAATTTTGACTTATTTTGGAAGTGCAAAAGAGAGGAAGCTTAAAAGACAAGGATGGTTGAAACCAAACTCATTTCATGTATGCATAACAACTTATCGATTAATTATTCAGGATTCGAAAGTCTTTAAGCGAAAGAAGTGGAAATACTTGATCTTAGATGAAGCCCACCTCATAAAAAATTGGAAGTCACAAAGATGGCAAACCCTCTTGAATTTCAATTCAAAGCGACGTATTCTCTTGACTGGTACACCACTACAGAATGATCTTATGGAACTTTGGTCTCTTATGCATTTCTTGATGCCTCATGTTTTCCAGTCTCATCAGGAGTTTAAGGATTGGTTCAGTAATCCTATATCTGGGATGGTGGAGGGGGAGGAAAAAGTAAATAAGGAGGTTGTTGATCGCTTGCACAATGTTCTTCGTCCATTCATACTCCGTCGCTTAAAACGAGATGTGGAGAAACAGCTTCCAATGAAGCATGAGCATGTTATATATTGTAGATTGTCAAAAAGGCAGCGGAATTTGTATGAAGACTTCATTGCTAGTATCGAGACCCAAGCCACTCTTGCGAGTGCCAATTTTTTTGGGATGATTAGTATCATAATGCAACTCCGTAAGGTTTGCAATCACCCTGACCTATTTGAAGGCCGTCCTATTATCAGTTCTTTTGATATGTGGGGCATTGATGTTCAGCTAAGTTCTTCTGTGTGTTCAGTGTTCTCAACCAACCCCTTTTCGTCAGTAGACCTAAGAGGTTTTGGATTTGTATTTACTCATCTTGATTATAGCATGACTTCATGGGAGAGTGATGAAGTAAAAGCTATTGAGACCCCTGCAAGTTTAATCATGGAGCGTGCTGATATGAATGGCCCACAAGTAATTAGGCCTAAATCAAAGGATCAGAAGAGTTTTCAAGGAACTAACATTTTTGAGGAAATTCAGAGGGCAATTTGGGAAGAGAGGCTAAGAGAAGCAAAGGAACGTGCAGCAGCTATTGCATGGTGGAATTCTTTGAGGTGTAAAAAAAGGCCTGTCTATTCAACAACCCTACGGGATCTTGTTACCGTCAGGCATCCTGTGTATGACATTCATCAGGTGAAGGCTAATCCTAGGTCATACATGTATTCCTCAAAGCTAGCCGACATTGTCTTCTCACCAATTGAACGTTTCCAAAGGATGGTTGATGTGGTTGAAAGTTTCATGTTTGCAATTCCAGCCGCACGAGCTCCATCTCCTGTCTGCTGGTGCAGTAGAAGTGAAACGCCAGTGTTTCTTCATCCATCGTACAAGCAGAAATGCTCTGAAGTTTTGTCACCCCTTCTGCCGCCAATCAGGCCAGCAATTGTCCGACGACAGGTGTATTTCCCAGATAGGCGTCTTATCCAATTTGACTGTGGGAAACTGCAGGAACTGGCAAGATTGTTGAGGAAATTAAAATCAGAAGGCCACCGAGCATTGATATTCACACAGATGACAAAGATGCTTGACGTACTGGAGGCTTTCATTAATTTGTATGGTTACACTTACATGAGATTAGATGGATCAACACAACCAGAAGAGAGGCAGACCTTGATGCAACGTTTTAATACAAACCCCAAAATTTTTCTTTTCATCTTGTCGACCCGTAGTGGGGGTGTTGGCATCAATCTAGTTGGAGCTGACACAGTTATTTTTTATGATAGTGACTGGAATCCTGCTATGGATCAACAAGCTCAAGATCGGTGCCATAGGATTGGTCAGACACGTGAAGTTCACATCTATAGATTGATAAGTGAAAGCACCATTGAAGAGAATATACTGAAGAAAGCAAAACAGAAGCGTGCACTTGATGACTTAGTTATACAGAGTGGGGGTTATAACACAGAATTTTTCAAGAAGCTTGATCCTATGGAATTGTTTTCAGGTCATAGAACACTTCCAGTGAAAAACATTCTGAAGGAGAAAAGCCAGGACATTGGGGATGAAGTTTCTGTAAGTAATGCAGATTTGGAGGCGGCATTGAAATATGCTGAAGATGAAGCAGATTATATGGCATTGAAGAAAGTTGAACTGGAAGAAGCCGTGGAAAACCAGGAGTTCACAGAAGAAGCCATTGGGAGACTTGATGAGGATGAGTTTGTAAATGAAGATGATACAAAGGTTGATGAGCCTTCAGAATTGGCTGAATCAGTTTCTAAATCAAGTAAAGAGAATGCATTAATGTTTGTTGGAAGTGATCCTAAGGAAGAAAGACCTCTCTCTGTATCTATCAGAGAAGATGATGTTGACATGTTGGCTGATGTCAAGCAGATGGCAGCGGCAGCGGCGGCAGGTGGACAAGCTATCTCAGCCTTTGAGAACCAGCTACGCCCAATTGATCGGTATGCCATTCGTTTTCTGGAGGTGTGGGATCCAATTATAGATAAAGCAGCCTTGGAATCTGAAGTCAGGTTTGAGGATACAGAATGGGAATTGGATCGCATTGAGAAGTACAAGGAAGATATGGAAGCTGAAATTGATGAAGATGAAGAACCTCTTGTATATGAAAGATGGGATGCTGATTTTGCGACTGAGGCATACCGGCAGCAAGTAGAGGCCTTGGCTCAACATCAGTTAATGGAGGAACTTGAGAATGAGGCTAGGCAGAAAGAAGAGGCTGATGAAGAAAATTGTGATCCCGGAAAAACTCAAACACCAAGGGATTCTAAGCCCAGACCTAAAAAGAAGCCCAAGAAAACCAAGTTTAAATCACTGAAGAAAGGATCTTTAGGCTCTGAATCCAAACCTATGAAAGAAGAACCACAAACCGATCCAATGTCAATAGATGATGACATTGTCACTAGCCTGGACATGGGTTCTCCAAATTCAACTAAGCAGAAAAAGCGTAAAAAACCTAAATTTATAGCTGATGGTGAAGAGGAGAAGACACTAAAGAAGTCCAAGAAGACCAAGAGGGCTGCTGATATTTGTGCTTCTGATTCAGATAATGCCTTGTTAGGTTTGCCAGATGAACATGCAGAACCAAAGCAATGTGAAAGTATGGTTGAATCTGAACAGAAACCTCCCAGCAGGAGTAAAATGGGAGGGAAAATATCCATAACTCCAATGCCAGTCAAACGGATTCTGACAATAAAACCAGAAAAAGTGAAGAAGGGTAATGCTTGGTCCAAAGATGGAGTTCCATCAGCTGATTTTTGGCTGCCGCAGGAAGATGCAATTTTATGTGCTATTGTTCATGAATATGGTTCTAACTGGAATTTGGTTAGCGAAACACTCTACGGCATGACTGCTGGAGGATCATACAGGGGCAGATACCGTCATCCTGTCCATTGCTGTGAGAGATTCAGAGAACTAGTTCAAAGATATGTTTTGTCAGCGGCAGACAATGCTAATCATGAGAGGGGCAACAGTACTGCCTTTGGAAAGTCTCTCCTGAAAGTTACGGAGGATAACATTCGGATGTTGTTAGATGTTGCTTCTGAGCAGGAAAATAGAGAGTTATTACTACAGCAGCATTTTTTTGCTCTGCTTTCTTCTGTCTGGAAGTCAGCATCACGTTTTGATCGGAGGAAAAATCCGCCAACACAAAATGGCCACTATTTTGATCGTAGTTTCTTTACTTCCATGGGCCATAATTCTCAGAGCCGTCTGAAGAAGCCTTCTGAAAGGATGACAGTCACTAATCTGGCCCAAAGCAGAAAGTTATTAGCCGCTGCACTTGAAGACACCAGTAGTAGGCAACAGGATGATAAAATCTCTCCCTCAAATCAGGGTGACAACGTGCCAGTGGCTACCGATCAGCTGGATGTGACACTGGAATTCCCAAAAGACGAGAGTGACACATTGATCTCATTTCCTTCTGTTATAAATTTGTCCATACAAGGGACAGAGCCCCTACAATCGTTAATTTGCCCAAATGGGGAAGATCATCGTCTTAGAGCTTGTGGATCTGTTGCTGAGGATCGGTTCAGGGAGGCGACCAGAGCTTGCGAGGAAGATTGTTATGGATGGGCTTCCTCAGTATTCCCGACGAATGATTCAAGGTCCAGACCAGGATCTAAGATACAGGCTTCAGGAAAGCACAAGTCCATCTCAGACTCCATTAAGCCTTCTAAATCAAAGTCCAAACGAAATTCAATGGATACTAGCGAGGCACGTCACCAACAGGTTGAGCCATTATTCCAGTCAATGCCATCACTTCCAGCAAAGGATCTGAGGATTGATCTTAATTCATTAGCAACGGAGGAAGCCGTGATTGATGATGAAATGGATTGCAGCCTGCCGTTTGTCCTGAACGAGGAAAATTCGTTGGAAACAGAAACTTTAGGTATGGTCCCCCATGAGTTTGTTGCTGGCTTAATCTCAGGCCTCGATGATTTTTCAGAATTACCGGAATATACAGACATTGGATAA 6120 0.4243 MASKGPRSKIDHESRAKRQKALEAPREPRRPKTHWDHVIEEMVWLSKDFESERKWKLAQAKKVALRASKGMLDPATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDAIEPVEKQSPEHHRSAQYKGEDEDVVNRSDEAIAEFQSDPNDNDEEYDVQSDDESEDDEQTLEEDEALITEEERQEELAALHDEVDLPLEELLKHYSGEKEPASHESSPEHSNDDDTEVRAGNGNENGDGSLSISKLGSSSSSMISGRRCEKSNGGLTTPAENIARDKTCQSENLVYDFSDEEEDGDFLLATEDNDDETTLSEEEKLEKMDAIAPKDEIALLQRESDMPVEELLAMYRKYSSGKHREDESEDAASLSEDLLDSPLHEDGRKKDPAVSVDGDVKPVEHMAIVQSQTEEQHWEVPHENPEGRDSENLIADAAAAARSAQPTGNTFSTTKVRTKFPFLLKYPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACERGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFILRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASIETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIISSFDMWGIDVQLSSSVCSVFSTNPFSSVDLRGFGFVFTHLDYSMTSWESDEVKAIETPASLIMERADMNGPQVIRPKSKDQKSFQGTNIFEEIQRAIWEERLREAKERAAAIAWWNSLRCKKRPVYSTTLRDLVTVRHPVYDIHQVKANPRSYMYSSKLADIVFSPIERFQRMVDVVESFMFAIPAARAPSPVCWCSRSETPVFLHPSYKQKCSEVLSPLLPPIRPAIVRRQVYFPDRRLIQFDCGKLQELARLLRKLKSEGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAKQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTLPVKNILKEKSQDIGDEVSVSNADLEAALKYAEDEADYMALKKVELEEAVENQEFTEEAIGRLDEDEFVNEDDTKVDEPSELAESVSKSSKENALMFVGSDPKEERPLSVSIREDDVDMLADVKQMAAAAAAGGQAISAFENQLRPIDRYAIRFLEVWDPIIDKAALESEVRFEDTEWELDRIEKYKEDMEAEIDEDEEPLVYERWDADFATEAYRQQVEALAQHQLMEELENEARQKEEADEENCDPGKTQTPRDSKPRPKKKPKKTKFKSLKKGSLGSESKPMKEEPQTDPMSIDDDIVTSLDMGSPNSTKQKKRKKPKFIADGEEEKTLKKSKKTKRAADICASDSDNALLGLPDEHAEPKQCESMVESEQKPPSRSKMGGKISITPMPVKRILTIKPEKVKKGNAWSKDGVPSADFWLPQEDAILCAIVHEYGSNWNLVSETLYGMTAGGSYRGRYRHPVHCCERFRELVQRYVLSAADNANHERGNSTAFGKSLLKVTEDNIRMLLDVASEQENRELLLQQHFFALLSSVWKSASRFDRRKNPPTQNGHYFDRSFFTSMGHNSQSRLKKPSERMTVTNLAQSRKLLAAALEDTSSRQQDDKISPSNQGDNVPVATDQLDVTLEFPKDESDTLISFPSVINLSIQGTEPLQSLICPNGEDHRLRACGSVAEDRFREATRACEEDCYGWASSVFPTNDSRSRPGSKIQASGKHKSISDSIKPSKSKSKRNSMDTSEARHQQVEPLFQSMPSLPAKDLRIDLNSLATEEAVIDDEMDCSLPFVLNEENSLETETLGMVPHEFVAGLISGLDDFSELPEYTDIG 2039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02008 2039 Gene3D - 1631 1692 - -
Accr5g02008 2039 MobiDBLite consensus disorder prediction 1910 1933 - -
Accr5g02008 2039 MobiDBLite consensus disorder prediction 1473 1487 - -
Accr5g02008 2039 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 484 723 IPR027417 -
Accr5g02008 2039 MobiDBLite consensus disorder prediction 1446 1549 - -
Accr5g02008 2039 Pfam SNF2-related domain 518 790 IPR000330 GO:0005524|GO:0140658
Accr5g02008 2039 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Accr5g02008 2039 MobiDBLite consensus disorder prediction 1577 1600 - -
Accr5g02008 2039 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 747 812 - -
Accr5g02008 2039 SMART helicmild6 1072 1155 IPR001650 -
Accr5g02008 2039 Coils Coil 1435 1458 - -
Accr5g02008 2039 MobiDBLite consensus disorder prediction 1 33 - -
Accr5g02008 2039 PANTHER HELICASE SRCAP-RELATED 15 1941 - -
Accr5g02008 2039 Gene3D - 470 746 IPR038718 -
Accr5g02008 2039 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 1008 1262 - -
Accr5g02008 2039 MobiDBLite consensus disorder prediction 1488 1507 - -
Accr5g02008 2039 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1046 1196 IPR001650 -
Accr5g02008 2039 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 513 678 IPR014001 -
Accr5g02008 2039 MobiDBLite consensus disorder prediction 224 273 - -
Accr5g02008 2039 MobiDBLite consensus disorder prediction 1934 1953 - -
Accr5g02008 2039 MobiDBLite consensus disorder prediction 1810 1831 - -
Accr5g02008 2039 MobiDBLite consensus disorder prediction 156 181 - -
Accr5g02008 2039 MobiDBLite consensus disorder prediction 188 223 - -
Accr5g02008 2039 Coils Coil 1260 1280 - -
Accr5g02008 2039 SMART ultradead3 497 690 IPR014001 -
Accr5g02008 2039 Coils Coil 206 226 - -
Accr5g02008 2039 Gene3D - 747 798 - -
Accr5g02008 2039 FunFam Photoperiod-independent early flowering 1 471 746 - -
Accr5g02008 2039 ProSiteProfiles Myb-like domain profile. 1635 1688 IPR001005 -
Accr5g02008 2039 CDD SF2_C_SNF 1031 1166 - -
Accr5g02008 2039 CDD DEXQc_SRCAP 501 723 - -
Accr5g02008 2039 SMART bromneu2 23 94 IPR014012 -
Accr5g02008 2039 Pfam Helicase conserved C-terminal domain 1043 1155 IPR001650 -
Accr5g02008 2039 Pfam HSA domain 27 93 IPR014012 -
Accr5g02008 2039 MobiDBLite consensus disorder prediction 1446 1472 - -
Accr5g02008 2039 Gene3D - 1015 1262 IPR027417 -
Accr5g02008 2039 FunFam Photoperiod independent early flowering protein 1631 1692 - -
Accr5g02008 2039 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 725 1212 IPR027417 -
Accr5g02008 2039 Coils Coil 1387 1407 - -
Accr5g02008 2039 MobiDBLite consensus disorder prediction 1534 1549 - -
Accr5g02008 2039 MobiDBLite consensus disorder prediction 153 316 - -
Accr5g02008 2039 MobiDBLite consensus disorder prediction 275 316 - -
Accr5g02008 2039 MobiDBLite consensus disorder prediction 1910 1956 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02008 Accr-Chr5 46459198 46472336 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02008 521 793 RAD5 or RAD16-like Gene Family AT5G43530 29.814 9.52e-28 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Accr5g02008 SNF2_N 8.7e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02008 K11661 - gmx:100794898 2964.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr2g02540 2 60884881 60889846 Accr5g02008 5 46459198 46472336 CCT