Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02007 ATGGCGTCTAAAGGTCCGAGGTCCAAGATTGATCACGAGAGTAGAGCAAAGCGGCAAAAGGCACTTGAGGCTCCAAGGGAGCCTCGACGTCCTAAAACTCACTGGGATCATGTCATAGAAGAGATGGTGTGGTTATCGAAGGATTTTGAGTCAGAGAGGAAATGGAAATTAGCTCAGGCAAAGAAAGTTGCTTTAAGAGCTAGCAAGGGCATGTTAGATCCGGCTACAAGAGGTGAAAAGAAGATGAAGGAGGAAGAGCAGCGATTAAGGAAAGTTGCACTAAATATTTCAAAGGATGTTAAGAAATTTTGGACAAAAATAGAAAAGCTGGTTCTTTACAAGCATCAGATGGAGCTTGATGAGAAAAAGAAAAAGGCACTTGACAAACAGCTTGAGTTTCTTTTGGGTCAAACTGAAAGGTACTCAACCATGTTGGCAGAAAATCTTGTGGATGCTATTGAACCAGTTGAGAAACAGTCGCCAGAACATCATAGGAGTGCCCAATACAAAGGAGAAGATGAAGACGTTGTCAACAGATCTGATGAAGCTATTGCTGAGTTTCAGTCAGATCCTAATGACAATGATGAAGAATACGATGTGCAATCTGATGATGAATCGGAGGATGATGAGCAAACCCTCGAGGAAGATGAGGCTCTCATAACTGAAGAAGAAAGGCAAGAGGAGTTGGCGGCTTTGCATGACGAAGTTGATCTTCCTCTTGAGGAGTTACTGAAGCATTATTCTGGGGAGAAGGCAGAACCAGCTAGTCATGAAAGTAGTCCAGAGCACAGCAATGATGATGATACAGAAGTCAGAGCTGGTAACGGAAATGAAAATGGAGACGGTAGTTTATCTATTAGCAAGCTTGGCTCAAGCAGCTCCAGCATGATCTCTGGTCGTCGTTGTGAAAAAAGTAATGGTGGTCTAACTACACCAGCAGAGAACATAGCCAGAGATAAGACCTGTCAATCTGAAAATCTTGTATATGACTTTAGTGATGAAGAGGAAGATGGGGACTTCTTGCTTGCCACAGAAGATAATGATGATGAAACAACCTTATCCGAGGAGGAAAAATTGGAAAAAATGGACGCAATTGCTCCAAAGGATGAGATTGCTTTATTACAAAGGGAGAGCGACATGCCTGTTGAGGAACTCCTTGCAATGTATAGAAAGTATTCCAGTGGCAAACATAGGGAAGATGAATCTGAAGATGCTGCTTCTTTGTCGGAAGATCTTTTGGATTCTCCACTGCATGAAGATGGAAGGAAGAAGGATCCTGCGGTTTCTGTGGATGGAGATGTCAAGCCTGTCGAGCACATGGCTATTGTACAGTCCCAGACTGAAGAACAACATTGGGAAGTTCCTCATGAAAATCCCGAGGGAAGGGATAGTGAAAATCTGATAGCAGATGCAGCAGCTGCTGCAAGATCAGCGCAACCTACTGGAAATACCTTCTCCACAACTAAAGTGCGCACAAAGTTCCCTTTTCTCCTCAAGTATCCTCTCCGTGAGTATCAACACATTGGATTAGATTGGCTTGTAACAATGTATGAGAAAAGGCTGAATGGGATTTTGGCAGATGAAATGGGACTTGGTAAAACAATTATGACTATAGCTTTGCTTGCACATCTTGCTTGTGAAAGAGGGATTTGGGGCCCACATCTCATTGTGGTACCAACTAGTGTCATGCTTAACTGGGAGACTGAATTTCTCAAATGGTGTCCTGCATTTAAAATTTTGACTTATTTTGGAAGTGCAAAAGAGAGGAAGCTTAAAAGACAAGGATGGTTGAAACCAAACTCATTTCATGTATGCATAACAACTTATCGATTAATTATTCAGGATTCGAAAGTCTTTAAGCGAAAGAAGTGGAAATACTTGATCTTAGATGAAGCCCACCTCATAAAAAATTGGAAGTCACAAAGATGGCAAACCCTCTTGAATTTCAATTCAAAGCGACGTATTCTCTTGACTGGTACACCACTACAGAATGATCTTATGGAACTTTGGTCTCTTATGCATTTCTTGATGCCTCATGTTTTCCAGTCTCATCAGGAGTTTAAGGATTGGTTCAGTAATCCTATATCTGGGATGGTGGAGGGGGAGGAAAAAGTAAATAAGGAGGTTGTTGATCGCTTGCACAATGTTCTTCGTCCATTCATACTCCGTCGCTTAAAACGAGATGTGGAGAAACAGCTTCCAATGAAGCATGAGCATGTTATATATTGTAGATTGTCAAAAAGGCAGCGGAATTTGTATGAAGACTTCATTGCTAGTATCGAGACCCAAGCCACTCTTGCGAGTGCCAATTTTTTTGGGATGATTAGTATCATAATGCAACTCCGTAAGGTTTGCAATCACCCTGACCTATTTGAAGGCCGTCCTATTATCAGTTCTTTTGATATGTGGGGCATTGATGTTCAGCTAAGTTCTTCTGTGTGTTCAGTGTTCTCAACCAACCCCTTTTCGTCAGTAGACCTAAGAGGTTTTGGATTTGTATTTACTCATCTTGATTATAGCATGACTTCATGGGAGAGTGATGAAGTAAAAGCTATTGAGACCCCTGCAAGTTTAATCATGGAGCGTGCTGATATGAATGGCCCACAAGTAATTAGGCCTAAATCAAAGGATCAGAAGAGTTTTCAAGGAACTAACATTTTTGAGGAAATTCAGAGGGCAATTTGGGAAGAGAGGCTAAGAGAAGCAAAGGAACGTGCAGCAGCTATTGCATGGTGGAATTCTTTGAGGTGTAAAAAAAGGCCTGTCTATTCAACAACCCTACGGGATCTTGTTACCGTCAGGCATCCTGTGTATGACATTCATCAGGTGAAGGCTAATCCTAGGTCATACATGTATTCCTCAAAGCTAGCCGACATTGTCTTCTCACCAATTGAACGTTTCCAAAGGATGGTTGATGTGGTTGAAAGTTTCATGTTTGCAATTCCAGCCGCACGAGCTCCATCTCCTGTCTGCTGGTGCAGTAGAAGTGAAACGCCAGTGTTTCTTCATCCATCGTACAAGCAGAAATGCTCTGAAGTTTTGTCACCCCTTCTGCCGCCAATCAGGCCAGCAATTGTCCGACGACAGGTGTATTTCCCAGATAGGCGTCTTATCCAATTTGACTGTGGGAAACTGCAGGAACTGGCAAGATTGTTGAGGAAATTAAAATCAGAAGGCCACCGAGCATTGATATTCACACAGATGACAAAGATGCTTGACGTACTGGAGGCTTTCATTAATTTGTATGGTTACACTTACATGAGATTAGATGGATCAACACAACCAGAAGAGAGGCAGACCTTGATGCAACGTTTTAATACAAACCCCAAAATTTTTCTTTTCATCTTGTCGACCCGTAGTGGGGGTGTTGGCATCAATCTAGTTGGAGCTGACACAGTTATTTTTTATGATAGTGACTGGAATCCTGCTATGGATCAACAAGCTCAAGATCGGTGCCATAGGATTGGTCAGACACGTGAAGTTCACATCTATAGATTGATAAGTGAAAGCACCATTGAAGAGAATATACTGAAGAAAGCAAAACAGAAGCGTGCACTTGATGACTTAGTTATACAGAGTGGGGGTTATAACACAGAATTTTTCAAGAAGCTTGATCCTATGGAATTGTTTTCAGGTCATAGAACACTTCCAGTGAAAAACATTCTGAAGGAGAAAAGCCAGGACATTGGGGATGAAGTTTCTGTAAGTAATGCAGATTTGGAGGCGGCATTGAAATATGCTGAAGATGAAGCAGATTATATGGCATTGAAGAAAGTTGAACTGGAAGAAGCCGTGGAAAACCAGGAGTTCACAGAAGAAGCCATTGGGAGACTTGATGAGGATGAGTTTGTAAATGAAGATGATACAAAGGTTGATGAGCCTTCAGAATTGGCTGAATCAGTTTCTAAATCAAGTAAAGAGAATGCATTAATGTTTGTTGGAAGTGATCCTAAGGAAGAAAGACCTCTCTCTGTATCTATCAGAGAAGATGATGTTGACATGTTGGCTGATGTCAAGCAGATGGCAGCGGCAGCGGCGGCAGGTGGACAAGCTATCTCAGCCTTTGAGAACCAGCTACGCCCAATTGATCGGTATGCCATTCGTTTTCTGGAGGTGTGGGATCCAATTATAGATAAAGCAGCCTTGGAATCTGAAGTCAGGTTTGAGGATACAGAATGGGAATTGGATCGCATTGAGAAGTACAAGGAAGATATGGAAGCTGAAATTGATGAAGATGAAGAACCTCTTGTATATGAAAGATGGGATGCTGATTTTGCGACTGAGGCATACCGGCAGCAAGTAGAGGCCTTGGCTCAACATCAGTTAATGGAGGAACTTGAGAATGAGGCTAGGCAGAAAGAAGAGGCTGATGAAGAAAATTGTGATCCCGGAAAAACTCAAACACCAAGGGATTCTAAGCCCAGACCTAAAAAGAAGCCCAAGAAAACCAAGTTTAAATCACTGAAGAAAGGATCTTTAGGCTCTGAATCCAAACCTATGAAAGAAGAACCACAAACCGATCCAATGTCAATAGATGATGACATTGTCACTAGCCTGGACATGGGTTCTCCAAATTCAACTAAGCAGAAAAAGCGTAAAAAACCTAAATTTATAGCTGATGGTGAAGAGGAGAAGACACTAAAGAAGTCCAAGAAGACCAAGAGGGCTGCTGATATTTGTGCTTCTGATTCAGATAATGCCTTGTTAGGTTTGCCAGATGAACATGCAGAACCAAAGCAATGTGAAAGTATGGTTGAATCTGAACAGAAACCTCCCAGCAGGAGTAAAATGGGAGGGAAAATATCCATAACTCCAATGCCAGTCAAACGGATTCTGACAATAAAACCAGAAAAAGTGAAGAAGGGTAATGCTTGGTCCAAAGATGGAGTTCCATCAGCTGATTTTTGGCTGCCGCAGGAAGATGCAATTTTATGTGCTATTGTTCATGAATATGGTTCTAACTGGAATTTGGTTAGCGAAACACTCTACGGCATGACTGCTGGAGGATCATACAGGGGCAGATACCGTCATCCTGTCCATTGCTGTGAGAGATTCAGAGAACTAGTTCAAAGATATGTTTTGTCAGCGGCAGACAATGCTAATCATGAGAGGGGCAACAGTACTGCCTTTGGAAAGTCTCTCCTGAAAGTTACGGAGGATAACATTCGGATGTTGTTAGATGTTGCTTCTGAGCAGGAAAATAGAGAGTTATTACTACAGCAGCATTTTTTTGCTCTGCTTTCTTCTGTCTGGAAGTCAGCATCACGTTTTGATCGGAGGAAAAATCCGCCAACACAAAATGGCCACTATTTTGATCGTAGTTTCTTTACTTCCATGGGCCATAATTCTCAGAGCCGTCTGAAGAAGCCTTCTGAAAGGATGACAGTCACTAATCTGGCCCAAAGCAGAAAGTTATTAGCCGCTGCACTTGAAGACACCAGTAGTAGGCAACAGGATGATAAAATCTCTCCCTCAAATCAGGGTGACAACGTGCCAGTGGCTACCGATCAGCTGGATGTGACACTGGAATTCCCAAAAGACGAGAGTGACACATTGATCTCATTTCCTTCTGTTATAAATTTGTCCATACAAGGGACAGAGCCCCTACAATCGTTAATTTGCCCAAATGGGGAAGATCATCGTCTTAGAGCTTGTGGATCTGTTGCTGAGGATCGGTTCAGGGAGGCGACCAGAGCTTGCGAGGAAGATTGTTATGGATGGGCTTCCTCAGTATTCCCGACGAATGATTCAAGGTCCAGACCAGGATCTAAGATACAGGCTTCAGGAAAGCACAAGTCCATCTCAGACTCCATTAAGCCTTCTAAATCAAAGTCCAAACGAAATTCAATGGATACTAGCGAGGCACGTCACCAACAGGTTGAGCCATTATTCCAGTCAATGCCATCACTTCCAGCAAAGGATCTGAGGATTGATCTTAATTCATTAGCAACGGAGGAAGCCGTGATTGATGATGAAATGGATTGCAGCCTGCCGTTTGTCCTGAACGAGGAAAATTCGTTGGAAACAGAAACTTTAGGTATGGTCCCCCATGAGTTTGTTGCTGGCTTAATCTCAGGCCTCGATGATTTTTCAGAATTACCGGAATATACAGACATTGGATAA 6123 0.4245 MASKGPRSKIDHESRAKRQKALEAPREPRRPKTHWDHVIEEMVWLSKDFESERKWKLAQAKKVALRASKGMLDPATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDAIEPVEKQSPEHHRSAQYKGEDEDVVNRSDEAIAEFQSDPNDNDEEYDVQSDDESEDDEQTLEEDEALITEEERQEELAALHDEVDLPLEELLKHYSGEKAEPASHESSPEHSNDDDTEVRAGNGNENGDGSLSISKLGSSSSSMISGRRCEKSNGGLTTPAENIARDKTCQSENLVYDFSDEEEDGDFLLATEDNDDETTLSEEEKLEKMDAIAPKDEIALLQRESDMPVEELLAMYRKYSSGKHREDESEDAASLSEDLLDSPLHEDGRKKDPAVSVDGDVKPVEHMAIVQSQTEEQHWEVPHENPEGRDSENLIADAAAAARSAQPTGNTFSTTKVRTKFPFLLKYPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACERGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFILRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASIETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIISSFDMWGIDVQLSSSVCSVFSTNPFSSVDLRGFGFVFTHLDYSMTSWESDEVKAIETPASLIMERADMNGPQVIRPKSKDQKSFQGTNIFEEIQRAIWEERLREAKERAAAIAWWNSLRCKKRPVYSTTLRDLVTVRHPVYDIHQVKANPRSYMYSSKLADIVFSPIERFQRMVDVVESFMFAIPAARAPSPVCWCSRSETPVFLHPSYKQKCSEVLSPLLPPIRPAIVRRQVYFPDRRLIQFDCGKLQELARLLRKLKSEGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAKQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTLPVKNILKEKSQDIGDEVSVSNADLEAALKYAEDEADYMALKKVELEEAVENQEFTEEAIGRLDEDEFVNEDDTKVDEPSELAESVSKSSKENALMFVGSDPKEERPLSVSIREDDVDMLADVKQMAAAAAAGGQAISAFENQLRPIDRYAIRFLEVWDPIIDKAALESEVRFEDTEWELDRIEKYKEDMEAEIDEDEEPLVYERWDADFATEAYRQQVEALAQHQLMEELENEARQKEEADEENCDPGKTQTPRDSKPRPKKKPKKTKFKSLKKGSLGSESKPMKEEPQTDPMSIDDDIVTSLDMGSPNSTKQKKRKKPKFIADGEEEKTLKKSKKTKRAADICASDSDNALLGLPDEHAEPKQCESMVESEQKPPSRSKMGGKISITPMPVKRILTIKPEKVKKGNAWSKDGVPSADFWLPQEDAILCAIVHEYGSNWNLVSETLYGMTAGGSYRGRYRHPVHCCERFRELVQRYVLSAADNANHERGNSTAFGKSLLKVTEDNIRMLLDVASEQENRELLLQQHFFALLSSVWKSASRFDRRKNPPTQNGHYFDRSFFTSMGHNSQSRLKKPSERMTVTNLAQSRKLLAAALEDTSSRQQDDKISPSNQGDNVPVATDQLDVTLEFPKDESDTLISFPSVINLSIQGTEPLQSLICPNGEDHRLRACGSVAEDRFREATRACEEDCYGWASSVFPTNDSRSRPGSKIQASGKHKSISDSIKPSKSKSKRNSMDTSEARHQQVEPLFQSMPSLPAKDLRIDLNSLATEEAVIDDEMDCSLPFVLNEENSLETETLGMVPHEFVAGLISGLDDFSELPEYTDIG 2040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02007 2040 MobiDBLite consensus disorder prediction 1582 1601 - -
Accr5g02007 2040 FunFam Photoperiod independent early flowering protein 1632 1693 - -
Accr5g02007 2040 MobiDBLite consensus disorder prediction 1489 1508 - -
Accr5g02007 2040 SMART ultradead3 498 691 IPR014001 -
Accr5g02007 2040 MobiDBLite consensus disorder prediction 1911 1957 - -
Accr5g02007 2040 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Accr5g02007 2040 PANTHER HELICASE SRCAP-RELATED 15 1942 - -
Accr5g02007 2040 MobiDBLite consensus disorder prediction 224 274 - -
Accr5g02007 2040 Coils Coil 1261 1281 - -
Accr5g02007 2040 Pfam Helicase conserved C-terminal domain 1044 1156 IPR001650 -
Accr5g02007 2040 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 514 679 IPR014001 -
Accr5g02007 2040 ProSiteProfiles Myb-like domain profile. 1636 1689 IPR001005 -
Accr5g02007 2040 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 748 813 - -
Accr5g02007 2040 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1047 1197 IPR001650 -
Accr5g02007 2040 Gene3D - 748 799 - -
Accr5g02007 2040 MobiDBLite consensus disorder prediction 1 33 - -
Accr5g02007 2040 MobiDBLite consensus disorder prediction 276 317 - -
Accr5g02007 2040 MobiDBLite consensus disorder prediction 1447 1473 - -
Accr5g02007 2040 FunFam Photoperiod-independent early flowering 1 472 747 - -
Accr5g02007 2040 Coils Coil 1388 1408 - -
Accr5g02007 2040 MobiDBLite consensus disorder prediction 1535 1550 - -
Accr5g02007 2040 Gene3D - 471 747 IPR038718 -
Accr5g02007 2040 SMART helicmild6 1073 1156 IPR001650 -
Accr5g02007 2040 MobiDBLite consensus disorder prediction 188 223 - -
Accr5g02007 2040 MobiDBLite consensus disorder prediction 156 181 - -
Accr5g02007 2040 MobiDBLite consensus disorder prediction 1811 1832 - -
Accr5g02007 2040 Coils Coil 206 226 - -
Accr5g02007 2040 MobiDBLite consensus disorder prediction 1935 1954 - -
Accr5g02007 2040 Gene3D - 1632 1693 - -
Accr5g02007 2040 MobiDBLite consensus disorder prediction 153 317 - -
Accr5g02007 2040 MobiDBLite consensus disorder prediction 1474 1488 - -
Accr5g02007 2040 MobiDBLite consensus disorder prediction 1911 1934 - -
Accr5g02007 2040 SMART bromneu2 23 94 IPR014012 -
Accr5g02007 2040 MobiDBLite consensus disorder prediction 1447 1550 - -
Accr5g02007 2040 Pfam HSA domain 27 93 IPR014012 -
Accr5g02007 2040 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 724 IPR027417 -
Accr5g02007 2040 CDD SF2_C_SNF 1032 1167 - -
Accr5g02007 2040 CDD DEXQc_SRCAP 502 724 - -
Accr5g02007 2040 Pfam SNF2-related domain 519 791 IPR000330 GO:0005524|GO:0140658
Accr5g02007 2040 Gene3D - 1016 1263 IPR027417 -
Accr5g02007 2040 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 726 1213 IPR027417 -
Accr5g02007 2040 Coils Coil 1436 1459 - -
Accr5g02007 2040 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 1009 1263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02007 Accr-Chr5 46459198 46472336 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02007 522 794 RAD5 or RAD16-like Gene Family AT5G43530 29.814 8.61e-28 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Accr5g02007 SNF2_N 8.7e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02007 K11661 - gmx:100794898 2968.72