Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01996 ATGAGTTCCCCCTCTGCTACTGAAGCCGCCGCAGCCGCCGCCGCCGCTTCCAACTCCTCGACGGAGTCCCTGAACGGCTTGAAATTCGGGCAGAAGATATACTTTGAGGATGTGGGCGTGGGAGGTGCTGTGAAATCCAGCGGTGGCGCGGCTTCGTCATCGTCCTCAGGGGTGACCCCGCCAAAGAAGGGGAGGGGCAGTGGGGCTCAGGGGGCTCAGCCACCGAGGTGTCAGGTGGAGGGCTGCAAAGTAGATCTGAGTGATGCGAAGGCTTACTATTCCAGACATAAAGTCTGTAGTATGCACTCCAAATCACCCAGGGTCGTTGTCGCTGGTCAAGAGCAAAGGTTTTGCCAACAGTGTAGCAGGTTTCACCAGCTTTCTGAATTTGATCAAGTAAAACGAAGTTGCCGCAGGCGGCTTGCTGGTCATAATGAACGGAGGAGAAAACCCCCACCCAGCTCCTTGATGGCTTCTCGATATGGCCGACTTGCTCCAGCTAATTTTGATAACAGCAATAGCAGAGGCGGTGGATTTCTAATGGAATTCACCTCGTATCCGAAACTTAGCCTGAGAAATTCAATGCCAACACCAACATCGTCTGAACAGCTTCCTGGGAATCCAACAGGGACATTTCCATGGCAGGGTCATTCGGAGTCTCCATCATTGCTTTTCTTGCAGGCAGGTTGTTCTCCAGTTGGCGGGACAAGCTACTCTGGATCCAGAAATTCTTCATCAGGGGAAAGCTTTTCGGGATTGACAGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAACCAAGCTTGGGCCCCTCGAAACAGAGCACCAAGTCTTGGTACAAATAATTTGATGAGCTTTGACGACACGCCCATCACACATCTCCCTGCAACTTCTCATCACGGACACGGGACATCCCTCCACCATCAACTTTCAAATGCCTCGTGGTGTTTCAAGGGCATCGATGCTGCTGCGGCTGAGAACTGTCCTCATGACATTGCCCCTGACCTTGGCCTGGGTCACCAAATTTCTCAGCCTATCAGCAGCTCTCTTCCTGGGGAGCTTGACGTGTCACAACAGGGTAGGAGGCATTACATGGATCTTGAGCAGTCCAGGGTCTACGATGATTCTCAGCATCACATGCACTGGTCTCTCTAG 1152 0.5252 MSSPSATEAAAAAAAASNSSTESLNGLKFGQKIYFEDVGVGGAVKSSGGAASSSSSGVTPPKKGRGSGAQGAQPPRCQVEGCKVDLSDAKAYYSRHKVCSMHSKSPRVVVAGQEQRFCQQCSRFHQLSEFDQVKRSCRRRLAGHNERRRKPPPSSLMASRYGRLAPANFDNSNSRGGGFLMEFTSYPKLSLRNSMPTPTSSEQLPGNPTGTFPWQGHSESPSLLFLQAGCSPVGGTSYSGSRNSSSGESFSGLTDSSCALSLLSNQAWAPRNRAPSLGTNNLMSFDDTPITHLPATSHHGHGTSLHHQLSNASWCFKGIDAAAAENCPHDIAPDLGLGHQISQPISSSLPGELDVSQQGRRHYMDLEQSRVYDDSQHHMHWSL 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01996 383 MobiDBLite consensus disorder prediction 45 77 - -
Accr5g01996 383 MobiDBLite consensus disorder prediction 47 61 - -
Accr5g01996 383 FunFam Squamosa promoter-binding-like protein 14 68 138 - -
Accr5g01996 383 MobiDBLite consensus disorder prediction 141 160 - -
Accr5g01996 383 MobiDBLite consensus disorder prediction 1 23 - -
Accr5g01996 383 Gene3D - 67 138 IPR036893 GO:0003677|GO:0005634
Accr5g01996 383 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 5 348 IPR044817 GO:0003677
Accr5g01996 383 Pfam SBP domain 77 150 IPR004333 GO:0003677
Accr5g01996 383 SUPERFAMILY SBT domain 75 156 IPR036893 GO:0003677|GO:0005634
Accr5g01996 383 ProSiteProfiles Zinc finger SBP-type profile. 74 151 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01996 Accr-Chr5 46363465 46366120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01996 27 383 SBP-box Gene Family AT2G42200 43.045 4.49e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Accr5g01996 SBP 3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01996 - - pcin:129298462 653.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr5g01996 5 46363465 46366120 Accr5g01996 5 46363465 46366120 ECH