Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01982 ATGGATTTGAATTCGCATCAGAGTTATCAGCCCCAACAGCATCAACCCAACTCCGGCTTAGCTCGGTTTCGTTCTACGCCCAGCTCGCTTTTTGCTGATTTCAGACAAGCTGTTGAATCTGTTAAATCCGAGAGACGAACTTCGAGATTAGCAAGCTGCAGTAATAGCAACGATACGGCGTTGCCGAGCTTTCAAGAATTCGAATCCGAACACAAACCCCCTAAATCTCCATCGGAGGCGGCTCTGAACCGTATGAATTCACCACAAGGCTACAGTGGCGGCGGGCGACCACCTCACTACCCCAGGCACAGTTCTTCCATGGATAGCTCCTTTCTACCGATGGCTTCAATGGGACTGGATCACGAAACTCAGCAAAAAAGCTTTGCTTCGCCTCTTCATAGGCAAAGTAGCTCACCTGCCGGTCTTTTCTCCAACATCTCATTTCTTAATGGGCATGGCCACATTAGAGGGGTAAGAAACTGTGGTGGGGTGGACAGAAGTAGTAATGATGGACTTGCTCCCTCTATCAGCGGATTGAAGAATCAGACTAGCATCTCATCAAGAAGTACCTCCCTGGGAGCGCTGTCCCAGATCTCTGAAATAGAGTGTGAGGGTATTGGAGCAACTAACCCAGATGATGGTAGGGTGGGAACTAGTAACAGTGGTGACACTCGGTATTGTAGCCCTGGCTTCCCTTTTGCTTCCTGGAATGATACAAATCTTACTGGTTTTAGAAGGGACCAAACTAGTAATGAAAAGTTGTATTCTGATGTGCAGAATATTGAGCTCGGAAGTCGGGTTAATGTATTATCGCACCACTTGAGTCTGCCAAAAACCCCTTCACATATGGCTGCTGTGGACAAGTTTCTTCAATTCCCTGATTCTGTTCCCTGTAAAATAAGAGCAAAGCGGGGCTGTGCCACTCATCCTCGAAGTATAGCCGAAAGGGTTAGAAGAACTCGTATCAGTGAACGCATGAAAAAGTTACAAGATCTTGTCCCAAACATGGACAAGCAAACAAACACAGCAGACATGTTGGACTTGGCTGTCGAGTACATTAAAGATCTTCAGAAACAATTCAAGACTCTGAGTGAGAAACGGGCAAACTGCAAATGTGCACGCACGCAGAAAGCAGATGCAGATTAA 1146 0.4668 MDLNSHQSYQPQQHQPNSGLARFRSTPSSLFADFRQAVESVKSERRTSRLASCSNSNDTALPSFQEFESEHKPPKSPSEAALNRMNSPQGYSGGGRPPHYPRHSSSMDSSFLPMASMGLDHETQQKSFASPLHRQSSSPAGLFSNISFLNGHGHIRGVRNCGGVDRSSNDGLAPSISGLKNQTSISSRSTSLGALSQISEIECEGIGATNPDDGRVGTSNSGDTRYCSPGFPFASWNDTNLTGFRRDQTSNEKLYSDVQNIELGSRVNVLSHHLSLPKTPSHMAAVDKFLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMKKLQDLVPNMDKQTNTADMLDLAVEYIKDLQKQFKTLSEKRANCKCARTQKADAD 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01982 381 Gene3D - 307 379 IPR036638 GO:0046983
Accr5g01982 381 Coils Coil 353 373 - -
Accr5g01982 381 FunFam Transcription factor bHLH130 family 307 376 - -
Accr5g01982 381 Pfam Helix-loop-helix DNA-binding domain 311 357 IPR011598 GO:0046983
Accr5g01982 381 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 56 371 - -
Accr5g01982 381 MobiDBLite consensus disorder prediction 1 25 - -
Accr5g01982 381 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 306 356 IPR011598 GO:0046983
Accr5g01982 381 SMART finulus 312 362 IPR011598 GO:0046983
Accr5g01982 381 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 309 371 IPR036638 GO:0046983
Accr5g01982 381 MobiDBLite consensus disorder prediction 37 113 - -
Accr5g01982 381 MobiDBLite consensus disorder prediction 47 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01982 Accr-Chr5 46208390 46210374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01982 1 362 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 46.512 2.52e-80 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr5g01982 HLH 1.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01982 - - qsa:O6P43_006556 417.542