Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01980 ATGGAGCAAACTACAGGAGGCCTGCCCGGATCCAGTCTTGCTATTCGTGAGCAAGATAAGTCCGCCCTTGAATCCATCCAATTTAACCAAGAAATTCAGGGAATCATGGATCCGCCCCCGGAAAACGCGAGCTCATTCACTGCACTTCTTGAACTCCCACCACCGCAAGCCGTGGAACTACTTCACTCGCCGGACTGTGGCGGAGCGGCTGCAAGCAGCGCATCTGCGAAATCCCTATGCCAAATCAATAATCAGAAACCCTATCTATTGCACTCTTTCAGTGGCAATTTATCTTTTCCTGCTAACGCCGCTTTGATCGAGCGAGCTGCCAAGTTCTCTGTGTTTGCCGGGGTAAACTCCAACCCAGAGGATTCCAACGTCGTTGGACGTAATTCGGGTGTCAATCTGGATAAAGTAAAGAATGAGCCACCAGAAAGCGATTCCAATCCTAGTCCAATGCAGGGCTGTGTTTCCGATCCCACCGTTGAGAACTCGAACCAGAGGGCCGCAAAGAGGAAGGAGCGAGAGAAGAAGGTTAAAGGCTGCTCAAAGAAGAGTAAAGGCGCCGCCGACGAGGCCTCCGGGGAAGCTGAAAAGCTTCCTTACGTTCACGTTCGAGCTCGACGAGGTCAAGCCACAGACAGCCATAGCTTAGCAGAAAGGGCGAGGAGAGAGAAGATAAATGCTCGGATGAAGCTTTTACAAGAACTGGTCCCCGGCTGTAACAAGATATCAGGAACTGCATTGGTTCTGGATGAAATCATCAACCATGTGCAATCTCTACAGCGGCAAGTGGAGTTCTTATCAATGAAATTGGCTGTGGTTAATCCAAGAATTGATTTCAACCTTGACAGCATATTGGCTACAGACGGTGCATCTCTCATGGAATGCAACTTCCCCAGCACGGTTGCTCCTTTGATGTGGCCAGAAATCCCAGTCAACGGAAACAGACAGCAATACCAACAACAGTGGCAAGTTGATGCAATCCACCAACCAGCTTGGGGGAGAGAGGAAGGAAACCATAATTTTATCACTCCAGATAACTCTTTTTTGAGCTATGACTCATCAGCAAATTCAGCAACTCTGCACTCAAATCAGTTGAAGATGGAGCTCTGA 1116 0.4892 MEQTTGGLPGSSLAIREQDKSALESIQFNQEIQGIMDPPPENASSFTALLELPPPQAVELLHSPDCGGAAASSASAKSLCQINNQKPYLLHSFSGNLSFPANAALIERAAKFSVFAGVNSNPEDSNVVGRNSGVNLDKVKNEPPESDSNPSPMQGCVSDPTVENSNQRAAKRKEREKKVKGCSKKSKGAADEASGEAEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMKLAVVNPRIDFNLDSILATDGASLMECNFPSTVAPLMWPEIPVNGNRQQYQQQWQVDAIHQPAWGREEGNHNFITPDNSFLSYDSSANSATLHSNQLKMEL 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01980 371 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 209 280 IPR036638 GO:0046983
Accr5g01980 371 SMART finulus 217 267 IPR011598 GO:0046983
Accr5g01980 371 FunFam transcription factor bHLH48-like isoform X1 208 280 - -
Accr5g01980 371 Pfam Helix-loop-helix DNA-binding domain 215 262 IPR011598 GO:0046983
Accr5g01980 371 Gene3D - 208 280 IPR036638 GO:0046983
Accr5g01980 371 Coils Coil 251 271 - -
Accr5g01980 371 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 113 353 IPR024097 GO:0006355
Accr5g01980 371 MobiDBLite consensus disorder prediction 145 165 - -
Accr5g01980 371 CDD bHLH_AtBPE_like 201 286 - -
Accr5g01980 371 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 211 261 IPR011598 GO:0046983
Accr5g01980 371 MobiDBLite consensus disorder prediction 181 197 - -
Accr5g01980 371 MobiDBLite consensus disorder prediction 120 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01980 Accr-Chr5 46169740 46174048 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01980 5 371 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 52.778 1.90e-108 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr5g01980 HLH 1.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01980 - - gmx:100795486 487.648