Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01973 ATGGAGACCGATAATGGTGACTCCAAGTCCAAGATGGAAGACTATGAAGTTATTGAGCAAATTGGCAGAGGAGCTTTTGGCTCCGCTTATCTTGTTCTTCATAACTCTGAGAATAAGAAGTATGTGCTGAAGAAGATTCGCTTGACCAAGCAAACCGAGAAATTCAAACGAACAGCGCACCAGGAGATGAACCTGATTGCAAAACTAAATAACCCATATATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGGGGAGTATATATGCATTGTAACTGGCTATTGTGAAGGAGGTGACATGGCTGAGAACATAAAGAAAGCTCGGGGATCATTTTTTCCTGAGGAGAAGGTCTGCAAATGGCTGACTCAGTTGTTGATAGCTGTGGACTACCTGCACTCTAATCGTGTACTCCATAGAGATCTTAAGTGTTCCAACATATTTCTCACCAAAGACAACTACATTCGTCTCGGTGACTTTGGTCTGGCAAAGCTGCTTAATTCAGAAGACCTTGCTTCCTCGGTTGTTGGAACTCCAAACTATATGTGTCCTGAGCTACTTGCAGATATACCCTATGGTTATAAATCTGATATATGGTCACTTGGTTGCTGCATGTTTGAAATTGCTGCACATCAACCAGCTTTTCGTGCTCCTGATATGGCGGGGCTTATCAATAAAATAAATAGATCCTCCATTTCTCCATTGCCAATTGTTTATTCTTCCACATTGAAACAACTCATAAAGAGCATGCTCAGGAAAAACCCTGAACATAGACCAACAGCAGCTGAATTGTTGAGGCATCCTCTTTTACAACCATATGTTCTCCGATGTCGTAATGCATCATCTAATGTTCTTCCAGTGTATCCCATAGTCAACTCAAAGGATAAAACAAAGAGGTCTTATAAATCTGGTGCCAGAAAAGAACGCAAGGACAAAGAAGTGGGATTAGAAGATCTTTTGGTTAGAGTTCATCCATTTGAGGGAAATGAAGATCTGCCTAACAATGGCAGGCTATGGGTCTCAAGCAGTGCAGAAGACATCCTTCAGACCAATCTGGCTGATCCTACCAGCTTCATAACTGAATCATCTACTAGTATCAGTGGCTCGAAGGATGGATCAACAACATCTGAATCAACCATTTGCAGCATGTGCAAGGAAGCAGACTATAAAAGTATACCTACAAGGGAGACAACTGACAATGAAATTACATCAAAGAGTATGCCAGGTCCTAAGCATGAAGGACAAGTATTTGCTGCTGAACAACTTCAAAAATCAGAAGGGGTTGACACAGTTGCAGTGACCACGGAAGTTGAAGATGCTTTACCTAATGGAGATTTCAATAAAGCTGAAGCGCAGAGAGATGTCAATCTTGATGACTTCAGGAAATCAACAGCATCAAGCGAAGAAAACACTGATAAAGGTGGGTCTCTAGATGAGGAAATGTCACCACCTGCGTTGCCACCTAGTAGTAAGGTTGAAGATAGTTCTGAATCGGGAGGAGTCTACTTACAGAAAAGGGAAGGCTCATATACGTGCGTATCTTCTGAGAGTAGTGATACACTTGCAGGTAAGGATGAAGGCAGAGAAAAGCCACACACGCATAAAGAAAATGATAGTGCTTGCGTGGTTGATCAGACACCAAGTGACAATTCTTTAGGTACACTTGATGCAGTAGGGGGTAATGAAGCCAAGAGTGAGCTGGATAGTTCCTGCGAGGAAAGAGCTCATGCTCTAGAGACTCTGCTTGAATTATGTGCTGAGCTACTCAAGCAAGACAAACTTGAAGAGCTTGCTGGTGTGCTGAGACCATTTGGGCCGGAGGCTGTCTCTTCCAGAGAGACTGCAATATGGTTGACAAAGAGCCTCATGTCTGCACAAAAATTCAATACTGAAACCTAG 1896 0.4267 METDNGDSKSKMEDYEVIEQIGRGAFGSAYLVLHNSENKKYVLKKIRLTKQTEKFKRTAHQEMNLIAKLNNPYIVEYKDAWVEKGEYICIVTGYCEGGDMAENIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVLHRDLKCSNIFLTKDNYIRLGDFGLAKLLNSEDLASSVVGTPNYMCPELLADIPYGYKSDIWSLGCCMFEIAAHQPAFRAPDMAGLINKINRSSISPLPIVYSSTLKQLIKSMLRKNPEHRPTAAELLRHPLLQPYVLRCRNASSNVLPVYPIVNSKDKTKRSYKSGARKERKDKEVGLEDLLVRVHPFEGNEDLPNNGRLWVSSSAEDILQTNLADPTSFITESSTSISGSKDGSTTSESTICSMCKEADYKSIPTRETTDNEITSKSMPGPKHEGQVFAAEQLQKSEGVDTVAVTTEVEDALPNGDFNKAEAQRDVNLDDFRKSTASSEENTDKGGSLDEEMSPPALPPSSKVEDSSESGGVYLQKREGSYTCVSSESSDTLAGKDEGREKPHTHKENDSACVVDQTPSDNSLGTLDAVGGNEAKSELDSSCEERAHALETLLELCAELLKQDKLEELAGVLRPFGPEAVSSRETAIWLTKSLMSAQKFNTET 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01973 631 Gene3D Transferase(Phosphotransferase) domain 1 97 320 - -
Accr5g01973 631 FunFam Serine/threonine-protein kinase Nek6 1 94 - -
Accr5g01973 631 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 12 535 - -
Accr5g01973 631 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Accr5g01973 631 SMART serkin_6 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr5g01973 631 SUPERFAMILY Protein kinase-like (PK-like) 12 300 IPR011009 -
Accr5g01973 631 CDD STKc_Nek 14 269 - -
Accr5g01973 631 Pfam Protein kinase domain 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr5g01973 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Accr5g01973 631 MobiDBLite consensus disorder prediction 450 475 - -
Accr5g01973 631 Gene3D Phosphorylase Kinase; domain 1 2 94 - -
Accr5g01973 631 ProSiteProfiles Protein kinase domain profile. 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr5g01973 631 MobiDBLite consensus disorder prediction 441 549 - -
Accr5g01973 631 FunFam serine/threonine-protein kinase Nek6 isoform X2 95 283 - -
Accr5g01973 631 MobiDBLite consensus disorder prediction 520 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01973 Accr-Chr5 46047009 46051600 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01973 9 270 MAP Kinase Kinase Kinase AT3G13530 33.835 3.29e-37 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Accr5g01973 Pkinase 9e-68 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr2g02575 2 61290678 61295631 Accr5g01973 5 46047009 46051600 CCT
Accr5g01973 5 46047009 46051600 Accr5g01973 5 46047009 46051600 ECH