Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01972 ATGGAGACCGATAATGGTGACTCCAAGTCCAAGATGGAAGACTATGAAGTTATTGAGCAAATTGGCAGAGGAGCTTTTGGCTCCGCTTATCTTGTTCTTCATAACTCTGAGAATAAGAAGTATGTGCTGAAGAAGATTCGCTTGACCAAGCAAACCGAGAAATTCAAACGAACAGCGCACCAGGAGATGAACCTGATTGCAAAACTAAATAACCCATATATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGGGGAGTATATATGCATTGTAACTGGCTATTGTGAAGGAGGTGACATGGCTGAGAACATAAAGAAAGCTCGGGGATCATTTTTTCCTGAGGAGAAGGTCTGCAAATGGCTGACTCAGTTGTTGATAGCTGTGGACTACCTGCACTCTAATCGTGTACTCCATAGAGATCTTAAGTGTTCCAACATATTTCTCACCAAAGACAACTACATTCGTCTCGGTGACTTTGGTCTGGCAAAGCTGCTTAATTCAGAAGACCTTGCTTCCTCGGTTGTTGGAACTCCAAACTATATGTGTCCTGAGCTACTTGCAGATATACCCTATGGTTATAAATCTGATATATGGTCACTTGGTTGCTGCATGTTTGAAATTGCTGCACATCAACCAGCTTTTCGTGCTCCTGATATGGCGGGGCTTATCAATAAAATAAATAGATCCTCCATTTCTCCATTGCCAATTGTTTATTCTTCCACATTGAAACAACTCATAAAGAGCATGCTCAGGAAAAACCCTGAACATAGACCAACAGCAGCTGAATTGTTGAGGCATCCTCTTTTACAACCATATGTTCTCCGATGTCGTAATGCATCATCTAATGTTCTTCCAGTGTATCCCATAGTCAACTCAAAGGATAAAACAAAGAGGTCTTATAAATCTGGTGCCAGAAAAGAACGCAAGGACAAAGAAGTGGGATTAGAAGATCTTTTGGTTAGAGTTCATCCATTTGAGGGAAATGAAGATCTGCCTAACAATGGCAGGCTATGGGTCTCAAGCAGTGCAGAAGACATCCTTCAGACCAATCTGGCTGATCCTACCAGCTTCATAACTGAATCATCTACTAGTATCAGTGGCTCGAAGGATGGATCAACAACATCTGAATCAACCATTTGCAGCATGTGCAAGGAAGCAGACTATAAAAGTATACCTACAAGGGAGACAACTGACAATGAAATTACATCAAAGAGTATGCCAGGTCCTAAGCATGAAGGACAAGTATTTGCTGCTGAACAACTTCAAAAATCAGAAGGGGTTGACACAGTTGCAGTGACCACGGAAGTTGAAGATGCTTTACCTAATGGAGATTTCAATAAAGCTGAAGCGCAGAGAGATGTCAATCTTGATGACTTCAGGAAATCAACAGCATCAAGCGAAGAAAACACTGATAAAGGTGGGTCTCTAGATGAGGAAATGTCACCACCTGCGTTGCCACCTAGTAGTAAGGTTGAAGATAGTTCTGAATCGGGAGGAGTCTACTTACAGAAAAGGGAAGGCTCATATACGTGCGTATCTTCTGAGAGTAGTGATACACTTGCAGTAGGGGGTAATGAAGCCAAGAGTGAGCTGGATAGTTCCTGCGAGGAAAGAGCTCATGCTCTAGAGACTCTGCTTGAATTATGTGCTGAGCTACTCAAGCAAGACAAACTTGAAGAGCTTGCTGGTGTGCTGAGACCATTTGGGCCGGAGGCTGTCTCTTCCAGAGAGACTGCAATATGGTTGACAAAGAGCCTCATGTCTGCACAAAAATTCAATACTGAAACCTAG 1791 0.4266 METDNGDSKSKMEDYEVIEQIGRGAFGSAYLVLHNSENKKYVLKKIRLTKQTEKFKRTAHQEMNLIAKLNNPYIVEYKDAWVEKGEYICIVTGYCEGGDMAENIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVLHRDLKCSNIFLTKDNYIRLGDFGLAKLLNSEDLASSVVGTPNYMCPELLADIPYGYKSDIWSLGCCMFEIAAHQPAFRAPDMAGLINKINRSSISPLPIVYSSTLKQLIKSMLRKNPEHRPTAAELLRHPLLQPYVLRCRNASSNVLPVYPIVNSKDKTKRSYKSGARKERKDKEVGLEDLLVRVHPFEGNEDLPNNGRLWVSSSAEDILQTNLADPTSFITESSTSISGSKDGSTTSESTICSMCKEADYKSIPTRETTDNEITSKSMPGPKHEGQVFAAEQLQKSEGVDTVAVTTEVEDALPNGDFNKAEAQRDVNLDDFRKSTASSEENTDKGGSLDEEMSPPALPPSSKVEDSSESGGVYLQKREGSYTCVSSESSDTLAVGGNEAKSELDSSCEERAHALETLLELCAELLKQDKLEELAGVLRPFGPEAVSSRETAIWLTKSLMSAQKFNTET 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01972 596 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 12 501 - -
Accr5g01972 596 MobiDBLite consensus disorder prediction 441 499 - -
Accr5g01972 596 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Accr5g01972 596 SMART serkin_6 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr5g01972 596 CDD STKc_Nek 14 269 - -
Accr5g01972 596 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Accr5g01972 596 MobiDBLite consensus disorder prediction 450 475 - -
Accr5g01972 596 SUPERFAMILY Protein kinase-like (PK-like) 12 300 IPR011009 -
Accr5g01972 596 Gene3D Phosphorylase Kinase; domain 1 2 94 - -
Accr5g01972 596 ProSiteProfiles Protein kinase domain profile. 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr5g01972 596 Gene3D Transferase(Phosphotransferase) domain 1 97 320 - -
Accr5g01972 596 FunFam Serine/threonine-protein kinase Nek6 1 94 - -
Accr5g01972 596 Pfam Protein kinase domain 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr5g01972 596 FunFam serine/threonine-protein kinase Nek6 isoform X2 95 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01972 Accr-Chr5 46047009 46051600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01972 9 270 MAP Kinase Kinase Kinase AT3G13530 33.835 1.91e-37 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Accr5g01972 Pkinase 7.9e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01972 K08857 - gmx:100793379 810.831