Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01971 ATGGCTGATCCTTTCTCCAATTTCTTTTCTCCTCCTCCTTCCGGATTCTTCCAATTCAATCCCCTCCCTTACTATTATCCTCCTAACCCTCCTCCACCAGTGTCCTCACACCAACATCATCATCAACATCCCTATCTCCATAACTTTATAGCTTCTTCTTCGCCTCCTACTTCACCTCCTCTTAGAGAAGCTCTACCTCTTCTCAACCTCAACCCCTCTCATGAGCCTCCTTGCACTACTTCCATGGAAGTGGAAGATCAATCTGCTCCTAAGCCTAAAGAAGAAGATGATGAAGAGGAGGAGGATGAGGATGAGGACGAGAACAGTGTGACTGTTGCGCTCCACATAGGCCTCCCTAGCCCTAGTGCTGCTGAGATGGCCTCTATCCTCTCTTCTTCTTCTTCCTCTCACACAGCACAAGAATTAGCAGCACCTGATGCTGATCTTGCGGACAATCCTTGCTCAGGACTCTCCAGGATCAACAAGGGCCAGTACTGGATCCCTACTCCTACCCAGATTCTCATTGGTCCTACCCAGTTCTCTTGCCCTGTTTGCTCCAAAACCTTCAACCGCTACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCAGAATCCCTGAGAGGTACACAACCAACGGGCATGTTGAGGCTTCCTTGTTATTGTTGTGCCCCAGGTTGCAGGAACAACATTGACCACCCGAGGGCTAAGCCCCTTAAGGACTTTAGAACCCTTCAGACTCACTACAAGAGGAAGCATGGCATTAAGCCCTTCATGTGCAGAAAATGTGGCAAGGCTTTTGCTGTGAGAGGAGATTGGAGAACCCATGAGAAGAACTGTGGCAAGCTTTGGTATTGCACTTGTGGCTCTGATTTTAAGCACAAGAGATCTCTTAAAGATCATATCAAGGCTTTTGGGAGTGGCCATGCTGCTTATGGGATCGATGGCTTTGAAGAAGAAGATGAGCCAGCTTCCGAAGTAGAGCAAGATAATGATTCAACCGAGTGA 1026 0.4815 MADPFSNFFSPPPSGFFQFNPLPYYYPPNPPPPVSSHQHHHQHPYLHNFIASSSPPTSPPLREALPLLNLNPSHEPPCTTSMEVEDQSAPKPKEEDDEEEEDEDEDENSVTVALHIGLPSPSAAEMASILSSSSSSHTAQELAAPDADLADNPCSGLSRINKGQYWIPTPTQILIGPTQFSCPVCSKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQDNDSTE 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01971 341 FunFam zinc finger protein WIP2-like 179 202 - -
Accr5g01971 341 PANTHER ZINC FINGER PROTEIN WIP2 37 337 IPR043584 GO:0003700|GO:0010468
Accr5g01971 341 SUPERFAMILY beta-beta-alpha zinc fingers 246 284 IPR036236 -
Accr5g01971 341 ProSiteProfiles Zinc finger C2H2 type domain profile. 180 207 IPR013087 -
Accr5g01971 341 SMART c2h2final6 264 284 IPR013087 -
Accr5g01971 341 SMART c2h2final6 180 202 IPR013087 -
Accr5g01971 341 MobiDBLite consensus disorder prediction 48 110 - -
Accr5g01971 341 Pfam Zinc finger, C2H2 type 180 199 IPR013087 -
Accr5g01971 341 Gene3D Classic Zinc Finger 179 202 - -
Accr5g01971 341 FunFam Zinc finger protein WIP2 233 315 - -
Accr5g01971 341 ProSitePatterns Zinc finger C2H2 type domain signature. 182 202 IPR013087 -
Accr5g01971 341 ProSiteProfiles Zinc finger C2H2 type domain profile. 264 284 IPR013087 -
Accr5g01971 341 SUPERFAMILY beta-beta-alpha zinc fingers 175 202 IPR036236 -
Accr5g01971 341 MobiDBLite consensus disorder prediction 92 108 - -
Accr5g01971 341 Gene3D Classic Zinc Finger 241 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01971 Accr-Chr5 46018244 46020484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01971 1 338 C2H2 Transcription Factor Family AT3G57670 62.725 8.13e-144 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr5g01971 zf-C2H2 0.0042 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01971 - - jre:108986074 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr2g02577 2 61324287 61326574 Accr5g01971 5 46018244 46020484 CCT
Accr5g01971 5 46018244 46020484 Accr5g01971 5 46018244 46020484 ECH