Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01966 ATGGAGAGTGGAAACTCTAAGAAGAAAGCATCAACTCTGTCTTTAGAGCAATTCGTCTCACTCATGGCCCCTCTTATTGATTTGGAAAAGGAAGCTGAGATATCAAGCTCAATCACTTCAGGCGCATCGAGAAGTTTGGATACGGCTCAAAAAAGGGGTTCGACAATCCTCAATTTAAAATGTGTCGATGTCCAGACAGGGCTTATGGGGAAATCTCTTATTGAGTTCCAGTCCACCAAAGGAGATGTTCTTCCGGCACACAAGTTCAGTACACATGATGTTGTTGTTTTAAGACTCAGCAAGGCTGATTTAGGTTCCCCTGCTCTTGGACAAGGTGTAGTTTACCGCTTAAAGGACTCCTCAATAACAGTTGCTTTTGATGATATACCAGAAGATGGTTTAAATAGTCCCCTCAGGCTGGAGAAAGTGGCAAATGAGGTGACATACCGTAGGATGAAGGATGCAGTAGTACAGTTGAGTAAAGGAGTGCATAAGGGTCCAGCTGCGGACTTAATTCCTGTCTTGTTTGGAGAGAGGCCACCAACAGTGTCCAAGAAGGATGTGTCATTCACTCTGTTTAACCCCAACCTCGATCACTCTCAGAAAGATGCAATCTCAAAGGCCCTATCGTCAAAGAAAGTATTTCTGCTCCATGGGCCTCCTGGAACAGGAAAAACGACAACAGTGGTGGAAATTATACTACAAGAAGTGAAGCGTGGATCAAAAATTATTGTTTGTGCCGCCTCAAATATTGCTGTTGACAACATTGTTGAGCGACTTGTCCCTCGCAGGATTAAGCTGGTGAGACTGGGTCATCCTGCACGTTTATTGCCTCAAGTACTTGACAGTGCACTGGACGCTCAGGTACTTCGAGGAGACAACAGTTCACTTGCAAATGACATTCGGAAGGAAATGAAGGCATTAAATGGAAAGTTGTTGAAAACCAAAGACAGAAATACAAGGAGGGACATTCAGAAGGAACTGCGAACTCTGTCCAAAGAAGAGCGGAAAAGACAACAGCTTGCTGTAACAGATGTAATTAAAGGTGCTGATGTGGTATTGACCACTTTGATTGGGGCTTGTTCTAAGAAGCTGGATAACACTTCATTTGACTTGGTCATTATCGACGAAGCTGCTCAGGCACTTGAGATAGCATGTTGGATCCCTATACTGAAGGGTTCAAGATGTATACTTGCAGGGGACCATCTTCAACTGCCCCCAACCATCCAAAGTGTTGAGGCCGAGAAGAAGGGATTAGGACGAACCCTCTTTGAACGACTTGCAGATATGTATGGAGATGAAGTCACATCTATGCTAACTGTCCAGTATCGCATGCATGAACTTATCATGGAGTGGTCTTCTAAAGAGCTTTACAACAGCAAGGTCAAAGCCCATGCAAGTGTTGCTGCACACATGCTGTTTGATCTTGAGGATGTGAAGAAGACCTCTTCAACTGAACCAACGCTACTTCTCATAGACACAGCTGGATGTGACATGGAAGAAAAGAAAGATGAAGAAGATAGCACCATGAATGAAGGTGAAGCTGAAGTTGCCATGGTCCATGCTAAGAGACTTGTGCAGAGTGGTGTGCTGCCTTCTGGTATTGGTATCATTACCCCGTATGCTGCACAGGTTGTTTTACTAAAGATGTTGAGAAACAAGGAGAACTCGCTGAAGGATCTTGAAATCTCAACTGTTGATGGCTTCCAGGGAAGGGAGAAGGAAGCCATTGTTATATCAATGGTTCGATCTAATTCAAAAAAGGAGGTGGGCTTTCTCAGTGATCGTCGCCGGATGAATGTGGCTGTGACGCGGGCGAGGAGGCAATGCTGCCTAGTCTGTGACACAGAAACTGTCAGTTCTGATGGGTTCCTAAAGCGATTGATTGAGTATTTTGAAGAGAATGGGGAGTATCAGAGTGCATCTGAGTATCAGAATGAATAG 1944 0.445 MESGNSKKKASTLSLEQFVSLMAPLIDLEKEAEISSSITSGASRSLDTAQKRGSTILNLKCVDVQTGLMGKSLIEFQSTKGDVLPAHKFSTHDVVVLRLSKADLGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYRRMKDAVVQLSKGVHKGPAADLIPVLFGERPPTVSKKDVSFTLFNPNLDHSQKDAISKALSSKKVFLLHGPPGTGKTTTVVEIILQEVKRGSKIIVCAASNIAVDNIVERLVPRRIKLVRLGHPARLLPQVLDSALDAQVLRGDNSSLANDIRKEMKALNGKLLKTKDRNTRRDIQKELRTLSKEERKRQQLAVTDVIKGADVVLTTLIGACSKKLDNTSFDLVIIDEAAQALEIACWIPILKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLADMYGDEVTSMLTVQYRMHELIMEWSSKELYNSKVKAHASVAAHMLFDLEDVKKTSSTEPTLLLIDTAGCDMEEKKDEEDSTMNEGEAEVAMVHAKRLVQSGVLPSGIGIITPYAAQVVLLKMLRNKENSLKDLEISTVDGFQGREKEAIVISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEENGEYQSASEYQNE 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01966 647 Gene3D - 24 427 IPR027417 -
Accr5g01966 647 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 8 646 - -
Accr5g01966 647 Coils Coil 298 318 - -
Accr5g01966 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 622 IPR027417 -
Accr5g01966 647 FunFam DNA-binding protein SMUBP-2 41 143 - -
Accr5g01966 647 SMART ultradead3 193 444 IPR014001 -
Accr5g01966 647 FunFam P-loop containing nucleoside triphosphate hydrolase 443 647 - -
Accr5g01966 647 CDD SF1_C_Upf1 445 633 IPR047187 -
Accr5g01966 647 CDD DEXXQc_SMUBP2 196 444 - -
Accr5g01966 647 SMART AAA_5 211 429 IPR003593 GO:0016887
Accr5g01966 647 Gene3D - 41 143 - -
Accr5g01966 647 Gene3D - 443 647 IPR027417 -
Accr5g01966 647 Pfam AAA domain 197 411 IPR041677 GO:0004386
Accr5g01966 647 NCBIfam IGHMBP2 family helicase 345 642 IPR004483 GO:0003677|GO:0005524
Accr5g01966 647 Pfam AAA domain 420 616 IPR041679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01966 Accr-Chr5 45968359 45974343 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01966 170 380 Core DNA Replication Machinery Family AT1G08840 27.962 4.65e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01966 - K19036 gmx:100810545 1126.69