Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01964 ATGTGCTGTGATTTGGAGCGGTTAAAGCTAGCACCGTCTCCAGCAATATCTTTGATTTTGTCAAGCACTACTCCACCTCAAAACGGGAAGATGAATCACTTGACTGTGGAAACTGAAGATAGTTTTGCAAGCCTGCTTGACCTTGCAGCTAATAATGACGTTGAGCATTTCAAAAGATCAATTGAGCATGATCCTTCCTCAATTGATGAGGTTGGACTGTGGTATGGTCGCCAAAAGGGTTCAAAGCAGATGGTCAACGAGCACCGGACGCCTTTGATGGTTGCTGCTACTTATGGTAGCATTGATGTCATCAAGTTGATTCTTTCATTATCCTATGCAGATATTAATCGGTCATGTGGGCTTGACAAAAGCACAGCTCTTCATTGCGCGGCATCAGGTGGGTCTGTAAATGCTGTTGATGTGGTGAAGCTGCTGCTGGCAGCTGGTGCTGATCCAAATTCTGTTGATGCCAATGGTCACTATCCAGTTGATGTTATTGTGGTACCTCCCAAGCTTGAACATGTGAAAAGTATTCTTGAAGAACTTCTTCAAACAGATTGTTCAATGGCAGGGTGTGGTCTTAGGGTGGTTACGGCTACAACAAATTCAAACTCTCCCCCTCCATCAACTTCTCCAGAGAATGGGTCTCTTTCTTCATTAGAGTTCCATTTGAAACTAAAGTTAAAGGAAGCTAATGCTTTATCTGCATCAGAGAAGAAAGAATATCCTGTTGATCCATCTCTTCCTGACATAAAAAACAGCATCTACTCAACTGATGAGTTCCGAATGTATTCTTTCAAGGTTCGACCATGCTCACGTGCCTATTCACATGATTGGACTGAATGTCCTTTCGTCCACCCAGGGGAAAATGCTCGGAGAAGGGACCCAAGGAAGTTTCATTATAGCTGTGTCCCTTGTCCTGATTTTCGTAAAGGAGCTTGCCGTCGAGGAGATATGTGTGAATATGCTCATGGTGTTTTCGAGTGCTGGCTGCATCCAGCTCAATATCGGACCCGCCTCTGCAAGGATGGGACCAGTTGCTCAAGAAGAGTTTGCTTCTTTGCCCATACAGCTGAGGAACTTAGGCCGTTGTATGTTTCAACTGGTTCTGCTGTTCCATCACCACGCTCAAGCACATCTTCTGCCATGGATTTTGCTGCAGCCATGAGCATGTTACCAGGCTCCCCTTCTTCAATGTCTGTCATGTCTCCTTCACCTTTCACCCCGCCTATGTCACCATCTGCCACTGGCATGTCACACTCTTCTGTTGCTTGGCCTCAACCTAATGTTCCAAACCTGCATCTGCCAGGAAGTAATATTTACTCCAGTCGTTTGAGATCTTCACTCAGTGCCCGAGATATCCCTGTAGAAGACTTTGATTTGTTGCATGACTATGATGTTCAGCAACACCAGCTACTTAATGAGATGTCTTGCCTTTCCCAACAATCTATGAATTCTAATAACCTGAACCGCTCTGGTCGGATGAAGACCGCCCTGACCCCTTCAAATCTTGATGATCTCTTTTCTGCTGAGAGTTCTTCCCCTCGGTTTGCTGATCCGACATTGAATTCAGCTGTCTTTTCACCCACACACAAATCAGCTGTCCTTAATCAATTTCAGCAGCAGCAAAGCATGCTTTCACCTGTGAATACAAATTTTTCTTCCAAGAATGTCGAGCATCCTTTGTTACATGCCTCATTCCAAACATCAGGAAGGATGTCCCCACGTAATATGGAACCCATCTCACCAATGAGCTCGAGGTTTTCTGTGCTATCTCAGCGTGAAAAGCAGCAACAGTTTCGTAGCCTTAGTTCTCGGGATCTTGGCTCCAACTCTGCTGCTTCTCTTGCCGCCGCTGCGGGTTACAATGACAGTTCTTGGTCAGAATGGGGATCCAGCAATGGTAAATTGGATTGGGCTGTCAGTGCTGATGAATTGGGCAAGCACCGTAGATCATCGTCGTTTGAGTTTGGAAGCAACAGCGAGGAGCCAGATTTATCATGGGTGCAGTCACTTGTGAAAGAATCTCCCACTGAGATTAAGGAGAAATTGGGAACAGCTGTCTCAACTGGTGATGTGAGCACTGGACAACAGCCAGACAAGCGTTTGAATCTTTAG 2118 0.4561 MCCDLERLKLAPSPAISLILSSTTPPQNGKMNHLTVETEDSFASLLDLAANNDVEHFKRSIEHDPSSIDEVGLWYGRQKGSKQMVNEHRTPLMVAATYGSIDVIKLILSLSYADINRSCGLDKSTALHCAASGGSVNAVDVVKLLLAAGADPNSVDANGHYPVDVIVVPPKLEHVKSILEELLQTDCSMAGCGLRVVTATTNSNSPPPSTSPENGSLSSLEFHLKLKLKEANALSASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMSMLPGSPSSMSVMSPSPFTPPMSPSATGMSHSSVAWPQPNVPNLHLPGSNIYSSRLRSSLSARDIPVEDFDLLHDYDVQQHQLLNEMSCLSQQSMNSNNLNRSGRMKTALTPSNLDDLFSAESSSPRFADPTLNSAVFSPTHKSAVLNQFQQQQSMLSPVNTNFSSKNVEHPLLHASFQTSGRMSPRNMEPISPMSSRFSVLSQREKQQQFRSLSSRDLGSNSAASLAAAAGYNDSSWSEWGSSNGKLDWAVSADELGKHRRSSSFEFGSNSEEPDLSWVQSLVKESPTEIKEKLGTAVSTGDVSTGQQPDKRLNL 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01964 705 Pfam Ankyrin repeats (3 copies) 82 156 IPR002110 GO:0005515
Accr5g01964 705 MobiDBLite consensus disorder prediction 567 590 - -
Accr5g01964 705 SUPERFAMILY Ankyrin repeat 45 180 IPR036770 -
Accr5g01964 705 ProSiteProfiles Ankyrin repeat profile. 122 157 IPR002110 GO:0005515
Accr5g01964 705 PANTHER UNKEMPT FAMILY MEMBER 47 676 IPR045234 -
Accr5g01964 705 MobiDBLite consensus disorder prediction 401 422 - -
Accr5g01964 705 ProSiteProfiles Zinc finger C3H1-type profile. 305 327 IPR000571 GO:0046872
Accr5g01964 705 MobiDBLite consensus disorder prediction 688 705 - -
Accr5g01964 705 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 305 325 IPR000571 GO:0046872
Accr5g01964 705 SMART c3hfinal6 335 358 IPR000571 GO:0046872
Accr5g01964 705 SMART c3hfinal6 300 326 IPR000571 GO:0046872
Accr5g01964 705 MobiDBLite consensus disorder prediction 682 705 - -
Accr5g01964 705 PRINTS Ankyrin repeat signature 141 155 IPR002110 GO:0005515
Accr5g01964 705 PRINTS Ankyrin repeat signature 88 103 IPR002110 GO:0005515
Accr5g01964 705 SMART ANK_2a 122 154 IPR002110 GO:0005515
Accr5g01964 705 SMART ANK_2a 87 117 IPR002110 GO:0005515
Accr5g01964 705 Gene3D - 38 189 IPR036770 -
Accr5g01964 705 FunFam Zinc finger CCCH domain-containing protein 66 258 326 - -
Accr5g01964 705 ProSiteProfiles Ankyrin repeat region circular profile. 122 156 - -
Accr5g01964 705 Gene3D - 301 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01964 Accr-Chr5 45945266 45947383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01964 36 676 C2H2 Transcription Factor Family AT5G12850 56.595 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Accr5g01964 Ank_2 3.9e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01964 - - qsa:O6P43_006533 1016.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr5g01964 5 45945266 45947383 Accr5g01964 5 45945266 45947383 ECH