Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01960 ATGTGTATTGCATTATCAGATGGTGAAACTAATAAAGAACATCAAAAACAACTTCCAGTCCCTAGCGTGCCTTTAACAGTAAATGAATTTTTTGCCCAACCATCACAGTTGGACCTTCTTGGCCCCGCAATGGCATGTAACCCTTACCCATATTCAGGTCCCAATTATGTAGGAGTGACCTCAAGTTATGGACCTCAGCCTCTGGCGCATCCTCATGGTGTAGGACTTCGTACTGCTCAAATGGTGTTACCACTGGAAATAGCAGAAGAGGAGCCTGTTTACGTTAATGCCAAGCAATACCATGGAATTTTGAGGCGCAGGAGATTACGTGCCAAGGCTGAGCTCGAAAAGAAGCTCATAAAAGGAAGGAAGCCTTACCTTCACGAGTCTCGACATTTGCATGCAATGAGAAGAGCCAGAGGATGTGGCGGCCGTTTCCTCAACACAAAGAAGCTTGCTAATAATGATACAACTTCTGCCAACACTACTACAGCCAACAATAATGAGGATGCTGCTGCTACTAATAAAACAATATCTCCTTATTCAAACTCAACTTCTGACAATAACAAGCACTGGGCATCACACATTCATGGATTTGATCTTGAAGGCGACTTCTCGGCTCACAAGCCTAAATCGCTCAATCACACTGGGGTTGGAAGAGTCCTCACCTTTAATTAA 678 0.4395 MCIALSDGETNKEHQKQLPVPSVPLTVNEFFAQPSQLDLLGPAMACNPYPYSGPNYVGVTSSYGPQPLAHPHGVGLRTAQMVLPLEIAEEEPVYVNAKQYHGILRRRRLRAKAELEKKLIKGRKPYLHESRHLHAMRRARGCGGRFLNTKKLANNDTTSANTTTANNNEDAAATNKTISPYSNSTSDNNKHWASHIHGFDLEGDFSAHKPKSLNHTGVGRVLTFN 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01960 225 ProSiteProfiles NF-YA/HAP2 family profile. 89 149 IPR001289 GO:0003700|GO:0006355
Accr5g01960 225 ProSitePatterns NF-YA/HAP2 subunit signature. 94 114 IPR018362 GO:0003677|GO:0016602
Accr5g01960 225 SMART cbf3 88 149 IPR001289 GO:0003700|GO:0006355
Accr5g01960 225 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 12 203 IPR001289 GO:0003700|GO:0006355
Accr5g01960 225 MobiDBLite consensus disorder prediction 155 186 - -
Accr5g01960 225 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 91 146 IPR001289 GO:0003700|GO:0006355
Accr5g01960 225 Gene3D - 89 150 - -
Accr5g01960 225 PRINTS CCAAT-binding transcription factor subunit B signature 92 114 IPR001289 GO:0003700|GO:0006355
Accr5g01960 225 PRINTS CCAAT-binding transcription factor subunit B signature 123 146 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01960 Accr-Chr5 45892542 45895236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01960 25 179 CCAAT-HAP2 Transcription Factor Family AT5G12840 46.497 1.15e-38 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Accr5g01960 CBFB_NFYA 6.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01960 K08064 - tcc:18598988 185.652