Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01937 ATGGAGGAAGGGAAGAATAATAAACAGTCGTTGTTGGATCCTCATCAGTTGCATGCAAGGAAGTGGAATCCCCCACCTTTCTTGTTAAAGACATACATGCTGGTGGAGGATCCGGCCACCGACAACATCATATCGTGGAACCCCGACGGCACGGCTTTTGTGGTGTGGCAGCCGGCGGAGTTTGCCCGTGACCTTCTTCCCACTCTCTTCAAGCACAGCAACTTCTCCAGCTTTGTTCGCCAGCTCAATACCTATGGATTTCGTAAAGCGGCAACGAACAGATGGGAATTTTGCAACGACAAATTCAGGAAAGGGGAGAAAGAAAAACTAAGTGAGATCAGACGGAGAAAGGCGTGGTCCAACAGGCAACAGCAACAAGCAAATCATAATCAGGAATATTCTGATCAGGAAGAGCAAAGGTCATATTCAACCTCTTCGTCTTCGGGATATTCTAATCTGGTGGATGAGAACAAGAGACTCAAGAGAGAGAACGGAGCACTGAACTCAGAGCTGGCGGCCATGAAGAGAAAGTGCAAGGACCTGCTTGAGTTGGTGGCCAAGCATGCCAAGACAAACGAGGAAGAAGAAGACGAGAGGGCGCCTTTGTTATTCGGTGTGAGGCTTCATGTGAAGCGAGGACAAGGAGATTTAAAGACAAATACAAGTCCCAGTATTTTCTTGCCCCAGTCATGCAAATAA 699 0.4778 MEEGKNNKQSLLDPHQLHARKWNPPPFLLKTYMLVEDPATDNIISWNPDGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKAATNRWEFCNDKFRKGEKEKLSEIRRRKAWSNRQQQQANHNQEYSDQEEQRSYSTSSSSGYSNLVDENKRLKRENGALNSELAAMKRKCKDLLELVAKHAKTNEEEEDERAPLLFGVRLHVKRGQGDLKTNTSPSIFLPQSCK 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01937 232 Gene3D - 18 118 IPR036388 -
Accr5g01937 232 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr5g01937 232 PRINTS Heat shock factor (HSF) domain signature 27 50 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr5g01937 232 PRINTS Heat shock factor (HSF) domain signature 78 90 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr5g01937 232 Pfam HSF-type DNA-binding 27 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr5g01937 232 Coils Coil 150 198 - -
Accr5g01937 232 MobiDBLite consensus disorder prediction 114 157 - -
Accr5g01937 232 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 20 190 IPR027725 -
Accr5g01937 232 FunFam Heat stress transcription factor B-4 19 117 - -
Accr5g01937 232 SUPERFAMILY "Winged helix" DNA-binding domain 23 116 IPR036390 -
Accr5g01937 232 MobiDBLite consensus disorder prediction 120 154 - -
Accr5g01937 232 SMART hsfneu3 23 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01937 Accr-Chr5 45743534 45744506 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01937 24 188 HSF AT2G41690 58.889 1.56e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Accr5g01937 HSF_DNA-bind 1.2e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01937 K09419 - qsu:112013936 299.286