Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01936 ATGACGACGATGATGGAGGAAGGGAAGAATAATAAACAGTCGTTGTTGGATCCTCATCAGTTGCATGCAAGGAAGTGGAATCCCCCACCTTTCTTGTTAAAGACATACATGCTGGTGGAGGATCCGGCCACCGACAACATCATATCGTGGAACCCCGACGGCACGGCTTTTGTGGTGTGGCAGCCGGCGGAGTTTGCCCGTGACCTTCTTCCCACTCTCTTCAAGCACAGCAACTTCTCCAGCTTTGTTCGCCAGCTCAATACCTATGGATTTCGTAAAGCGGCAACGAACAGATGGGAATTTTGCAACGACAAATTCAGGAAAGGGGAGAAAGAAAAACTAAGTGAGATCAGACGGAGAAAGGCGTGGTCCAACAGGCAACAGCAACAAGCAAATCATAATCAGGAATATTCTGATCAGGAAGAGCAAAGGTCATATTCAACCTCTTCGTCTTCGGGATATTCTAATCTGGTGGATGAGAACAAGAGACTCAAGAGAGAGAACGGAGCACTGAACTCAGAGCTGGCGGCCATGAAGAGAAAGTGCAAGGACCTGCTTGAGTTGGTGGCCAAGCATGCCAAGACAAACGAGGAAGAAGAAGACGAGAGGGCGCCTTTGTTATTCGGTGTGAGGCTTCATGTGAAGCGAGGACAAGGAGATTTAAAGACAAATACAAGTCCCAGTATTTTCTTGCCCCAGTCATGCAAATAA 711 0.4782 MTTMMEEGKNNKQSLLDPHQLHARKWNPPPFLLKTYMLVEDPATDNIISWNPDGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKAATNRWEFCNDKFRKGEKEKLSEIRRRKAWSNRQQQQANHNQEYSDQEEQRSYSTSSSSGYSNLVDENKRLKRENGALNSELAAMKRKCKDLLELVAKHAKTNEEEEDERAPLLFGVRLHVKRGQGDLKTNTSPSIFLPQSCK 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01936 236 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr5g01936 236 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr5g01936 236 PRINTS Heat shock factor (HSF) domain signature 31 54 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr5g01936 236 SMART hsfneu3 27 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr5g01936 236 Pfam HSF-type DNA-binding 31 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr5g01936 236 Gene3D - 22 122 IPR036388 -
Accr5g01936 236 Coils Coil 154 202 - -
Accr5g01936 236 SUPERFAMILY "Winged helix" DNA-binding domain 27 120 IPR036390 -
Accr5g01936 236 MobiDBLite consensus disorder prediction 118 161 - -
Accr5g01936 236 MobiDBLite consensus disorder prediction 124 158 - -
Accr5g01936 236 FunFam Heat stress transcription factor B-4 23 121 - -
Accr5g01936 236 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 24 194 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01936 Accr-Chr5 45743522 45744506 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01936 28 192 HSF AT2G41690 58.889 1.45e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Accr5g01936 HSF_DNA-bind 1.3e-31 CL0123