Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01877 ATGTTAGCTTCATCGCCTTCTCTATTTGCACCCATTGAGTGGGCCTTGAAGGAACCCACAAGTTGTAATGATCAGAACTTGTTTTACAAAGACGGAGCTACTCTTCAGTTTGGTTGCTCGCCACCACCAGATCATCAGGTTCTGGTTCAGGTTGAGGAGGCTCAGAGATCTAGGTCAATATCCCTTGCCGTTAGTGGAGAAGACCCTACCATGCTCAAAAAACTTAACCATAATGCTAGTGAACGTGATCGTCGCAAGAAGATCAATAGCTTGTATTCCTCACTTCGTTCTATACTTCCTTTGTCTGATCAAACGAAAAAGTTAAGCATTCCGGCAACAATTTCACGAGTCCTAAAGTATATACCGGAGTTACAACAGCAAGTGGAAGGGCTTATCAAGAAAAAAGAGGAGCTTTTGCTGAGAATCTCTCGGCAAGTAGACGCGTCAGCAAAAGAATGTCGAAGGAAAATGGCTCATCACTACGCTGCCGCTGCTTGTGTGGTTTCAACAAGCAGGCTCAATGATAACGAAGTTGTTGTTCAGATTTCCTCTGACAAGATCCACAAAACACCTCTCTCAGAGATACTGTTGTGTTTAGAAAAGGAAGGGCTTTTACTGCTAAATTCTTCCACCTTTGACACCTTTGGACATCGAGTCTTCTATAACTTGCATTTGCAGGTGGATGAAACTTGTAACATAGAGCCAGAAATTCTAAGCAAGATGATTTTGTCAATTTATGAGAGGAAGGAAGGGAATTTTCGATGTTATTAA 771 0.4215 MLASSPSLFAPIEWALKEPTSCNDQNLFYKDGATLQFGCSPPPDHQVLVQVEEAQRSRSISLAVSGEDPTMLKKLNHNASERDRRKKINSLYSSLRSILPLSDQTKKLSIPATISRVLKYIPELQQQVEGLIKKKEELLLRISRQVDASAKECRRKMAHHYAAAACVVSTSRLNDNEVVVQISSDKIHKTPLSEILLCLEKEGLLLLNSSTFDTFGHRVFYNLHLQVDETCNIEPEILSKMILSIYERKEGNFRCY 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01877 256 Coils Coil 121 141 - -
Accr5g01877 256 FunFam Transcription factor ORG2 68 160 - -
Accr5g01877 256 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 70 230 - -
Accr5g01877 256 Pfam Helix-loop-helix DNA-binding domain 73 125 IPR011598 GO:0046983
Accr5g01877 256 SMART finulus 78 130 IPR011598 GO:0046983
Accr5g01877 256 CDD bHLH_AtORG2_like 73 147 - -
Accr5g01877 256 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 124 IPR011598 GO:0046983
Accr5g01877 256 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 73 142 IPR036638 GO:0046983
Accr5g01877 256 Gene3D - 67 158 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01877 Accr-Chr5 45056182 45057387 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01877 1 253 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 45.174 8.94e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr5g01877 HLH 4.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01877 - - pcin:129307381 357.066