Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01876 ATGTTGGCTTTATCGCCTTCTCTGTTCGCTCCCACTGAGTGGACCTTGGAGGAACCCACAAGTCATAATGATCCCAACTTGTTTTACAAAGACGGATCTACTCCTCAGTTTAGTTGCTCGCCGCCGCCAGGTCATGATGTTGAGGTTGAGGAGGATCAAAGATCTCCGCCAATTTCTCTCGTTGTAGGTGGCGACCCTACCATGGTCAAAAAGCGTGACCACAATGCTAGTGAACGCGATCGTCGCAAGAAGATCAATAGCTTGTATTCCTCACTTCGTTCTATGCTTCCTTTGGCTGATCAAACGAAAAAGTTGAGTATTCCGGCAACAATTTCACGAATTGTAAAGTACATACCGGAGTTACAGCAGCAAGTGGAAATGCTTATCAAGAAGAAGGAGGAGCTTTTTTTGAGAACGTCTCGGCAAGGAGATGCGTCAGCCAATAAAGAATGTCGAAGGAAAATGGCTCATCACTACACTGCCACTGCTTGTGTGGTTTCAACAAGCAGGCTCACTGAAAACGAAGCTGTTTTTCAGATTTCCTCTGACAAGCTCCACAAAACTCCTTTGTCAGAGATATTGCTGTGTTTAGAAAAGGAAGGGCTTTTACTGCTAAATGCTTCCACCTTTGACACCTTTGGACATCGGGTCTTCTATAACTTGCATTTTCAGACGGATGAAACTTGTGGGATAGAGCCAGAAATTCTACGCGAGAAGATTTTAGCAATATTATGA 735 0.4435 MLALSPSLFAPTEWTLEEPTSHNDPNLFYKDGSTPQFSCSPPPGHDVEVEEDQRSPPISLVVGGDPTMVKKRDHNASERDRRKKINSLYSSLRSMLPLADQTKKLSIPATISRIVKYIPELQQQVEMLIKKKEELFLRTSRQGDASANKECRRKMAHHYTATACVVSTSRLTENEAVFQISSDKLHKTPLSEILLCLEKEGLLLLNASTFDTFGHRVFYNLHFQTDETCGIEPEILREKILAIL 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01876 244 Gene3D - 65 157 IPR036638 GO:0046983
Accr5g01876 244 SMART finulus 75 127 IPR011598 GO:0046983
Accr5g01876 244 FunFam Transcription factor ORG2 65 150 - -
Accr5g01876 244 Pfam Helix-loop-helix DNA-binding domain 70 122 IPR011598 GO:0046983
Accr5g01876 244 Coils Coil 118 138 - -
Accr5g01876 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 121 IPR011598 GO:0046983
Accr5g01876 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 70 138 IPR036638 GO:0046983
Accr5g01876 244 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 56 239 - -
Accr5g01876 244 MobiDBLite consensus disorder prediction 14 40 - -
Accr5g01876 244 CDD bHLH_AtORG2_like 70 142 - -
Accr5g01876 244 MobiDBLite consensus disorder prediction 12 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01876 Accr-Chr5 45050560 45051765 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01876 1 243 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 41.339 3.49e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr5g01876 HLH 1.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01876 - - pcin:129307381 334.339