Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01854 ATGGAAGATGATGAGTTCATCGACCTAACCCAACCTTCTCAAGGTTTTTCGTCGGAAAGATACCTGCTCGGCTTCGTCTGCGCCAACATCGTTGGGATTAAACACTACTCTGGTACCATCAGTGGCCGTGAAATGGTTGGTCTGGTCCGTGAACATCTCAACCCCTTCGATGAGAACGCCATTAAGGTCCTCAACACTCGAGCAAATCAGGTTGGGCATATTGAACGCGCTGTCGCTGCCGTACTGTCTCCCTTGATAGACTCCGAACTTATCATTGTGGAAGGCATTGTGCCCAAAACGTACTCTGGTAACAAATTCAAGATTCCTTGTCAAATTCATATATTTGCGACGATTGAGAATTTTCCAACCGTGAAAGATGTGATCTCAGAAAGTGGGTTAGCTTTAATTTTAGTATCTGATGCAGCGTCTACGTTGTCAGAGTCTATGGCTGTGAAAGATAAGAAGGCTAAGAATGAGTTTAAGACTGTAGATGAGATTTTTAAGTTGGTTGATGAGAATATTAGCAAAAGGGGTGCATTGGAAGCTTTGGAGCCTCCTCGAAGTGTCATCAAGTCTGATCTTTTCCTCCATCAAAAGGAAGGCTTGGGGTGGTTAGTTTATAGAGAGAATTCTGATGAATTGCCCCCATTTTGGGAAGAGAAAGATGGAGCCTTTGTGAATGTTTTGACTAATTATCATACGGACACGAGGCCAGAGCCTTTGCGAGGTGGTATTCTAGCTGATGATATGGGATTAGGCAAGACCTTAACGTTACTTTCTTTGATTGTTCTTGATAAAGATTCTATTGCTCTAAATATGGGAGAAGGGAAGCATGATGAAATGGGGGAACGTGATGACTTCGCTATCTCAAGTGGTAAGAAGGGTAAAAGGAGAGGAACGAATAAACAGCCCACTGGATCAGCAAAAAGACGCAAGACTGATAGTACTTCTTCAAGGGGCTATGGCACACCTTCAACTAGCATGGATATAAAGACTACATTGGTTGTGTGCCCCGCTTCTGTGATTTCAACATGGATAACACAGTTAGAAGAACATACTAAGCCTGGCACATTGAAGACGTACATGTATTATGGTGATAAGAGGACCGACAATGCTGAAGAACTTAAGATGTATGATCTAGTATTAACCACATACACCACTTTAGCTACTGAAGAATCTTCTCCAGACTCACCCATAAATAAAATACAGTGGTGGAGGGTCATTTTGGATGAAGCACATGTAATAAAAAATGTGAATGCTAAACAAAGTCAAGCTATCATGAAAATTGTAGCTAAGCGGAGGTGGGCTGTTACAGGGACACCAATTCAAAATGGTTTATATGATTTATTTTCTCTCATGGCATTTTTACGCTTTCAACCATTTTCAACAAGGAGTTATTGGCAGAGCTTAGTGCAACGTCCTCTTGCTGAAAGAAACACAAATGGACTCTTACGTCTTCAGGTTTTGATGGCAACAATTTCGTTGCGAAGAACAAAAGATAAAGCATTGGTAGGATTGCCTCCAAAAACTGTAGAGACTTGTTTTGTTGAACTTCTTGAGGAAGAACGGAAACTATATGATCAGATAGAATCGAGAGCAAAGGACATAGTGGCAGGTTATATAAAGGATGCAAGCATAACGCGCAACTATTCGACCGTACTTGGTATAATTTTACGACTTCGCCAAATTTGTACTGATGTGGCATTGTGCCCTTCCGATCTCAAATCGTTACTCCCTTCTAATAACATTGAAGATGTTTCCAATAACCCGGAATTACTGCAAAAGTTGGTGGAGGTGCTGCAAGATGGTGAAGATTTTGATTGTCCAATATGTATTTCTCCACCCACTGACATTGTGATTACATGCTGTGCTCACATATACTGCCAAGCTTGTATTCTGAAAACCCTACAGCGGAGCAAAGGCTGTTGTCCCCTTTGTCGTCACCCCCTTGAAGAATCTGATTTGTTCTCCGCCCCACCTCAATCTTCTGGTGCTGATGCTGATGGACTCTCCTCAGGCAAAACCAGCTTATCCTCTAAGGTGTCTGCTCTGCTGAAACTCCTTGTTGCCTCAAGGGACCAACATCCAGCTACAAAATCAGTTGTGTTTTCTCAGTTTCGTAAGATGCTGATTTTACTTGAACAGCCTCTGAAAGCAGCTGGTTTCAAGACATTGCGTCTTGATGGGACCATGAATGCTAAACAAAGGGGCCGGGTTATGGAAGAATTTGCAACTGGAGGAACAGAGGGGCCCATGATTCTACTGGCAAGCCTCAAGGCTTCAGGCACAGGTATAAATCTGACAGCCGCCTCCAGAGTATACTTATTGGAGCCATGGTGGAACCCAGGAGTGGAGGAACAAGCAATGGACCGTGTCCACCGCATCGGACAGAAAGAGGAGGTGAAGATTGTAAGATTGATTGCTAAAAACAGCATTGAAGAGAGGGTGTTGGAGTTGCAAGAGAAGAAGAAGCAGCTTGCAAAGGAAGCGTTTGGAAAGAGGAGGGCAAAGGGTAACAGGGAAGTTGGAGGGGATGATTTCCGAATGCTCTTGTCCTTGTGA 2562 0.4325 MEDDEFIDLTQPSQGFSSERYLLGFVCANIVGIKHYSGTISGREMVGLVREHLNPFDENAIKVLNTRANQVGHIERAVAAVLSPLIDSELIIVEGIVPKTYSGNKFKIPCQIHIFATIENFPTVKDVISESGLALILVSDAASTLSESMAVKDKKAKNEFKTVDEIFKLVDENISKRGALEALEPPRSVIKSDLFLHQKEGLGWLVYRENSDELPPFWEEKDGAFVNVLTNYHTDTRPEPLRGGILADDMGLGKTLTLLSLIVLDKDSIALNMGEGKHDEMGERDDFAISSGKKGKRRGTNKQPTGSAKRRKTDSTSSRGYGTPSTSMDIKTTLVVCPASVISTWITQLEEHTKPGTLKTYMYYGDKRTDNAEELKMYDLVLTTYTTLATEESSPDSPINKIQWWRVILDEAHVIKNVNAKQSQAIMKIVAKRRWAVTGTPIQNGLYDLFSLMAFLRFQPFSTRSYWQSLVQRPLAERNTNGLLRLQVLMATISLRRTKDKALVGLPPKTVETCFVELLEEERKLYDQIESRAKDIVAGYIKDASITRNYSTVLGIILRLRQICTDVALCPSDLKSLLPSNNIEDVSNNPELLQKLVEVLQDGEDFDCPICISPPTDIVITCCAHIYCQACILKTLQRSKGCCPLCRHPLEESDLFSAPPQSSGADADGLSSGKTSLSSKVSALLKLLVASRDQHPATKSVVFSQFRKMLILLEQPLKAAGFKTLRLDGTMNAKQRGRVMEEFATGGTEGPMILLASLKASGTGINLTAASRVYLLEPWWNPGVEEQAMDRVHRIGQKEEVKIVRLIAKNSIEERVLELQEKKKQLAKEAFGKRRAKGNREVGGDDFRMLLSL 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01854 853 Coils Coil 809 829 - -
Accr5g01854 853 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 150 849 - -
Accr5g01854 853 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 498 840 IPR027417 -
Accr5g01854 853 Gene3D - 17 135 - -
Accr5g01854 853 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 235 459 IPR014001 -
Accr5g01854 853 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 488 IPR027417 -
Accr5g01854 853 CDD RING-HC_HLTF 603 655 - -
Accr5g01854 853 Pfam Helicase conserved C-terminal domain 680 796 IPR001650 -
Accr5g01854 853 Pfam SNF2-related domain 197 568 IPR000330 GO:0005524|GO:0140658
Accr5g01854 853 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 586 672 IPR013083 -
Accr5g01854 853 Pfam Zinc finger, C3HC4 type (RING finger) 608 646 IPR018957 GO:0046872
Accr5g01854 853 SMART helicmild6 711 796 IPR001650 -
Accr5g01854 853 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 683 843 IPR001650 -
Accr5g01854 853 SUPERFAMILY RING/U-box 592 653 - -
Accr5g01854 853 Gene3D - 507 852 IPR027417 -
Accr5g01854 853 SMART ring_2 608 646 IPR001841 -
Accr5g01854 853 MobiDBLite consensus disorder prediction 289 325 - -
Accr5g01854 853 ProSiteProfiles Zinc finger RING-type profile. 608 647 IPR001841 -
Accr5g01854 853 Pfam HIRAN domain 24 102 IPR014905 GO:0003676|GO:0008270|GO:0016818
Accr5g01854 853 CDD SF2_C_SNF 677 807 - -
Accr5g01854 853 Gene3D - 169 279 IPR038718 -
Accr5g01854 853 SMART HIRAN_2 23 118 IPR014905 GO:0003676|GO:0008270|GO:0016818
Accr5g01854 853 Gene3D - 314 498 IPR038718 -
Accr5g01854 853 ProSitePatterns Zinc finger RING-type signature. 623 632 IPR017907 -
Accr5g01854 853 SMART ultradead3 190 471 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01854 Accr-Chr5 44858419 44861687 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01854 3 853 RAD5 or RAD16-like Gene Family AT5G05130 62.777 0.0 1076
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Accr5g01854 SNF2_N 6.4e-78 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01854 K15711 - jre:108979720 1144.03