Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01853 ATGGAAGATGATGAGTTCATCGACCTAACCCAACCTTCTCAAGGTTTTTCGTCGGAAAGATACCTGCTCGGCTTCGTCTGCGCCAACATCGTTGGGATTAAACACTACTCTGGTACCATCAGTGGCCGTGAAATGGTTGGTCTGGTCCGTGAACATCTCAACCCCTTCGATGAGAACGCCATTAAGGTCCTCAACACTCGAGCAAATCAGGTTGGGCATATTGAACGCGCTGTCGCTGCCGTACTGTCTCCCTTGATAGACTCCGAACTTATCATTGTGGAAGGCATTGTGCCCAAAACGTACTCTGCGTCTACGTTGTCAGAGTCTATGGCTGTGAAAGATAAGAAGGCTAAGAATGAGTTTAAGACTGTAGATGAGATTTTTAAGTTGGTTGATGAGAATATTAGCAAAAGGGGTGCATTGGAAGCTTTGGAGCCTCCTCGAAGTGTCATCAAGTCTGATCTTTTCCTCCATCAAAAGGAAGGCTTGGGGTGGTTAGTTTATAGAGAGAATTCTGATGAATTGCCCCCATTTTGGGAAGAGAAAGATGGAGCCTTTGTGAATGTTTTGACTAATTATCATACGGACACGAGGCCAGAGCCTTTGCGAGGTGGTATTCTAGCTGATGATATGGGATTAGGCAAGACCTTAACGTTACTTTCTTTGATTGTTCTTGATAAAGATTCTATTGCTCTAAATATGGGAGAAGGGAAGCATGATGAAATGGGGGAACGTGATGACTTCGCTATCTCAAGTGGTAAGAAGGGTAAAAGGAGAGGAACGAATAAACAGCCCACTGGATCAGCAAAAAGACGCAAGACTGATAGTACTTCTTCAAGGGGCTATGGCACACCTTCAACTAGCATGGATATAAAGACTACATTGGTTGTGTGCCCCGCTTCTGTGATTTCAACATGGATAACACAGTTAGAAGAACATACTAAGCCTGGCACATTGAAGACGTACATGTATTATGGTGATAAGAGGACCGACAATGCTGAAGAACTTAAGATGTATGATCTAGTATTAACCACATACACCACTTTAGCTACTGAAGAATCTTCTCCAGACTCACCCATAAATAAAATACAGTGGTGGAGGGTCATTTTGGATGAAGCACATGTAATAAAAAATGTGAATGCTAAACAAAGTCAAGCTATCATGAAAATTGTAGCTAAGCGGAGGTGGGCTGTTACAGGGACACCAATTCAAAATGGTTTATATGATTTATTTTCTCTCATGGCATTTTTACGCTTTCAACCATTTTCAACAAGGAGTTATTGGCAGAGCTTAGTGCAACGTCCTCTTGCTGAAAGAAACACAAATGGACTCTTACGTCTTCAGGTTTTGATGGCAACAATTTCGTTGCGAAGAACAAAAGATAAAGCATTGGTAGGATTGCCTCCAAAAACTGTAGAGACTTGTTTTGTTGAACTTCTTGAGGAAGAACGGAAACTATATGATCAGATAGAATCGAGAGCAAAGGACATAGTGGCAGGTTATATAAAGGATGCAAGCATAACGCGCAACTATTCGACCGTACTTGGTATAATTTTACGACTTCGCCAAATTTGTACTGATGTGGCATTGTGCCCTTCCGATCTCAAATCGTTACTCCCTTCTAATAACATTGAAGATGTTTCCAATAACCCGGAATTACTGCAAAAGTTGGTGGAGGTGCTGCAAGATGGTGAAGATTTTGATTGTCCAATATGTATTTCTCCACCCACTGACATTGTGATTACATGCTGTGCTCACATATACTGCCAAGCTTGTATTCTGAAAACCCTACAGCGGAGCAAAGGCTGTTGTCCCCTTTGTCGTCACCCCCTTGAAGAATCTGATTTGTTCTCCGCCCCACCTCAATCTTCTGGTGCTGATGCTGATGGACTCTCCTCAGGCAAAACCAGCTTATCCTCTAAGGTGTCTGCTCTGCTGAAACTCCTTGTTGCCTCAAGGGACCAACATCCAGCTACAAAATCAGTTGTGTTTTCTCAGTTTCGTAAGATGCTGATTTTACTTGAACAGCCTCTGAAAGCAGCTGGTTTCAAGACATTGCGTCTTGATGGGACCATGAATGCTAAACAAAGGGGCCGGGTTATGGAAGAATTTGCAACTGGAGGAACAGAGGGGCCCATGATTCTACTGGCAAGCCTCAAGGCTTCAGGCACAGGTATAAATCTGACAGCCGCCTCCAGAGTATACTTATTGGAGCCATGGTGGAACCCAGGAGTGGAGGAACAAGCAATGGACCGTGTCCACCGCATCGGACAGAAAGAGGAGGTGAAGATTGTAAGATTGATTGCTAAAAACAGCATTGAAGAGAGGGTGTTGGAGTTGCAAGAGAAGAAGAAGCAGCTTGCAAAGGAAGCGTTTGGAAAGAGGAGGGCAAAGGGTAACAGGGAAGTTGGAGGGGATGATTTCCGAATGCTCTTGTCCTTGTGA 2445 0.4368 MEDDEFIDLTQPSQGFSSERYLLGFVCANIVGIKHYSGTISGREMVGLVREHLNPFDENAIKVLNTRANQVGHIERAVAAVLSPLIDSELIIVEGIVPKTYSASTLSESMAVKDKKAKNEFKTVDEIFKLVDENISKRGALEALEPPRSVIKSDLFLHQKEGLGWLVYRENSDELPPFWEEKDGAFVNVLTNYHTDTRPEPLRGGILADDMGLGKTLTLLSLIVLDKDSIALNMGEGKHDEMGERDDFAISSGKKGKRRGTNKQPTGSAKRRKTDSTSSRGYGTPSTSMDIKTTLVVCPASVISTWITQLEEHTKPGTLKTYMYYGDKRTDNAEELKMYDLVLTTYTTLATEESSPDSPINKIQWWRVILDEAHVIKNVNAKQSQAIMKIVAKRRWAVTGTPIQNGLYDLFSLMAFLRFQPFSTRSYWQSLVQRPLAERNTNGLLRLQVLMATISLRRTKDKALVGLPPKTVETCFVELLEEERKLYDQIESRAKDIVAGYIKDASITRNYSTVLGIILRLRQICTDVALCPSDLKSLLPSNNIEDVSNNPELLQKLVEVLQDGEDFDCPICISPPTDIVITCCAHIYCQACILKTLQRSKGCCPLCRHPLEESDLFSAPPQSSGADADGLSSGKTSLSSKVSALLKLLVASRDQHPATKSVVFSQFRKMLILLEQPLKAAGFKTLRLDGTMNAKQRGRVMEEFATGGTEGPMILLASLKASGTGINLTAASRVYLLEPWWNPGVEEQAMDRVHRIGQKEEVKIVRLIAKNSIEERVLELQEKKKQLAKEAFGKRRAKGNREVGGDDFRMLLSL 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01853 814 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 196 420 IPR014001 -
Accr5g01853 814 Gene3D - 17 129 - -
Accr5g01853 814 MobiDBLite consensus disorder prediction 250 286 - -
Accr5g01853 814 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 107 810 - -
Accr5g01853 814 Pfam Helicase conserved C-terminal domain 641 757 IPR001650 -
Accr5g01853 814 SMART ultradead3 151 432 IPR014001 -
Accr5g01853 814 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 547 633 IPR013083 -
Accr5g01853 814 Gene3D - 130 239 IPR038718 -
Accr5g01853 814 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 459 801 IPR027417 -
Accr5g01853 814 CDD SF2_C_SNF 638 768 - -
Accr5g01853 814 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 449 IPR027417 -
Accr5g01853 814 Gene3D - 468 813 IPR027417 -
Accr5g01853 814 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 644 804 IPR001650 -
Accr5g01853 814 SMART helicmild6 672 757 IPR001650 -
Accr5g01853 814 Gene3D - 275 459 IPR038718 -
Accr5g01853 814 Pfam SNF2-related domain 158 529 IPR000330 GO:0005524|GO:0140658
Accr5g01853 814 ProSitePatterns Zinc finger RING-type signature. 584 593 IPR017907 -
Accr5g01853 814 Pfam HIRAN domain 24 101 IPR014905 GO:0003676|GO:0008270|GO:0016818
Accr5g01853 814 CDD RING-HC_HLTF 564 616 - -
Accr5g01853 814 ProSiteProfiles Zinc finger RING-type profile. 569 608 IPR001841 -
Accr5g01853 814 SMART HIRAN_2 23 118 IPR014905 GO:0003676|GO:0008270|GO:0016818
Accr5g01853 814 SUPERFAMILY RING/U-box 553 614 - -
Accr5g01853 814 Pfam Zinc finger, C3HC4 type (RING finger) 566 613 - -
Accr5g01853 814 Coils Coil 770 790 - -
Accr5g01853 814 SMART ring_2 569 607 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01853 Accr-Chr5 44858419 44861687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01853 3 814 RAD5 or RAD16-like Gene Family AT5G05130 60.443 0.0 1019
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Accr5g01853 SNF2_N 5.7e-78 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01853 K15711 - jre:108979720 1087.79