Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01852 ATGACCATGAAGTCTGGCTCACTAGAATACTGGAGGAATTACTTCCGAACTGCAAATTCTGATATATTCGATATAATTCACCATGCGATCATGGTGGCGGTTTTCGATTGTCCAAAGGAATTTAGATCACGAAGAGATGGGATTGCGGAACGTTTGTTTTCTAGTAGATGGACTCGTTGTGTGGGCTGTGATCGATTAGACTTGATGGTTTCTGGTGATGATGAGGGAGATGGAGGTTGTAAGAGTGGTTTTGATCCTGAAGCTACTGAATTGGAAGCAGGAGCCAGTAAAGAGAGCAAGGTCAATAGTAGCAGGGACGATCACGAAGAGATGAACAGGAAACAAGTCAGTAATTTTAGTTTTGGAGAAGCTGAGGCATTGACTGATGAGATTGAAGAAGAGTCTCTGATGGTTGGGGAGGTTTTGAGGATCAAAGAGATTCTTCATAACAGCAAGGAAGAGCCCGATTCAGTGTTATTTGAGTCATTGAGGAGGCTCCAGCTGCTGGCACTCACCGTGGATCTTCTTAAGGGAACTGAGATTGGAAAGGCTGTCAATCCTCTCAGGAAGCATGGATCAAAGGAGATCCGTCAACTTGCACGAACTCTTATCGATGGTTGGAAAGCAATGGTAGATGAATGGGTCAAGTCCACAACAGCTATACCAACTTCAGTAGAAGGCACCCCAGATTCAGTTAATCCATCAGTCGTTGATGAAGAGGAAGGGCTTCCGTCACCTCCTCTTGATGAAATGGCTTTTCTTGCAGCTCCACCTGGTTCAATGGAATTCTCACAGTTCTTTGATGGCGTGGATGATGAAGGAAATTTCCAACAAAGTGGGGAATTCATCAAGACTCGCGAACGCATCAGAAAAACTACTATGGACAGTCAAAACGTAGTAAAGAGAAAACCACAGGCTTCCATTGAGGCCAAGGAGAGTAAATGTCATCAAACGAAGAATAATGAGGTTGCCATGAGACAGAGTAAACCGGTCTGCACTGATTCTAGCCTTGGAAGGCCACCAAAATCCAGGTTACAGCAAAAAAACAACACAGGACTAAAGATGCAGCAAAAACAAGAGACAAGTGCTATCCCAAAGAGGCCTCTTCTTGCTCAGCAAGATAAATTCAAGTGTTCAGATGATGTTTCAGTCCAAGCAAAACTAGAAGCCACTAAGAGGAAACTTCAGGAGTCTTATCAACAAGCAGAAAATGCCAAGAAGCAGCGAACAATACAGGTTATGGAGTTGCATGACCTTCCAAGGCAAGGCAATGGCCAACGAAATCCACCCTTCAAGTTTGGGAAGGCTCAGGGACGAAGATAG 1323 0.4429 MTMKSGSLEYWRNYFRTANSDIFDIIHHAIMVAVFDCPKEFRSRRDGIAERLFSSRWTRCVGCDRLDLMVSGDDEGDGGCKSGFDPEATELEAGASKESKVNSSRDDHEEMNRKQVSNFSFGEAEALTDEIEEESLMVGEVLRIKEILHNSKEEPDSVLFESLRRLQLLALTVDLLKGTEIGKAVNPLRKHGSKEIRQLARTLIDGWKAMVDEWVKSTTAIPTSVEGTPDSVNPSVVDEEEGLPSPPLDEMAFLAAPPGSMEFSQFFDGVDDEGNFQQSGEFIKTRERIRKTTMDSQNVVKRKPQASIEAKESKCHQTKNNEVAMRQSKPVCTDSSLGRPPKSRLQQKNNTGLKMQQKQETSAIPKRPLLAQQDKFKCSDDVSVQAKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPRQGNGQRNPPFKFGKAQGRR 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01852 440 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 130 222 IPR035441 -
Accr5g01852 440 SMART TFS2_5 138 213 IPR003617 GO:0005634
Accr5g01852 440 MobiDBLite consensus disorder prediction 296 362 - -
Accr5g01852 440 Coils Coil 385 412 - -
Accr5g01852 440 MobiDBLite consensus disorder prediction 76 113 - -
Accr5g01852 440 CDD TFIIS_I 140 212 - -
Accr5g01852 440 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 430 IPR044805 -
Accr5g01852 440 MobiDBLite consensus disorder prediction 91 113 - -
Accr5g01852 440 MobiDBLite consensus disorder prediction 305 319 - -
Accr5g01852 440 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 135 221 IPR035441 -
Accr5g01852 440 ProSiteProfiles TFIIS N-terminal domain profile. 139 214 IPR017923 -
Accr5g01852 440 MobiDBLite consensus disorder prediction 417 440 - -
Accr5g01852 440 Pfam TFIIS helical bundle-like domain 163 211 IPR017923 -
Accr5g01852 440 MobiDBLite consensus disorder prediction 320 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01852 Accr-Chr5 44822103 44824990 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Accr5g01852 Med26 2.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01852 - - gmx:100775579 567.77