LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr5g01812	ATGGGGAGGAAGCGAAAGCTCACGCCTAAACCTGCCGAATCCGTTGAACCCCCATTGAAGCAACAGCATCAACAGCAGCAGCAGCAGCAGCAACAGCAATATGGGCCAGAAGCAGACCAAACTGTTGATGAACAAGATAATGGAGCCGATTACGAAGAAGTTGAAGTGGAAGAAGAGGAGGAGGTAGAAGAAGAGGAAGAGGAAGAGGAGGAACAAGAACCTGGAGAAGGATCAGGACATGATAACGCCAATCCTGATCCCGCCCAAAACGCGAATGATCAGGCATCTAAGGTCCAATCAACATCGGCGGCTGCAACATTAGTAACCGCTCAACATGGAAAGGAGGAAGAGGACGACGAGCCGATTCATAAGCTTCTGGAACCGTTCAGCAAGGAACAAGTTTTAAACTTGCTGTTGGAAGCGGCGAATAAACATAACGATGTAGCGGATCGGGTCCGAAAGGTGGCTGACGAGGACCCCGCTCATCGAAAAATCTTCGTACATGGCCTCGGATGGGACACAAACGCAGATACCCTCATCAACGTTTTCAAGCAGTACGGCGAAATTGAAGATTGCAAGGCGGTAAGTGACAAGGTATCCGGTAAATCCAAGGGCTATGGCTTTATCCTCTTCAAATCGCGTCGTGGAGCTCGCAATGCGCTGAAGCAACCGCAGAAGAAGATCGGGAACCGAATGACGGCCTGCCAGCTGGCTTCGATCGGCCCGGTACAACAGCCTACCCCGGCCCAATCAACCCCAGCGCAACCAGTATCAGAGTATACCCAAAGGAAGATTTACGTCAGCAATGTTGGCGCCGATTTGAGTGCTCAGAAATTGCATGTGTTTTTTTCGAAGTTTGGGGAGATCGAAGAGGGACCATTAGGGCTTGATAAGGTGACTGGGAAACCAAAAGGTTTCTGCTTGTTTGTGTACAAGAGCGTTGAGAGTGCTAGAAAGGCGCTGGAAGAGCCTCACAAGGAATTTGAGGGCCATATTTTGCACTGTCAGAAGGCAATAGATGGTCCAAAGCCGGGAAAGCCTCAATATCAGCAACATCAGAATCCTCAGAGAACCCAATTCCAGAGAAATGAGACCCCTTCATTTGTTGGTGGGGCTGCTACCGGACAAGGGCACCTCATGGCGCCAGCGGGACCTGGTATTGGATTTAACCAGCAGGCAGCGGCTGCACAGACACTAAACCCAGCTCTTGGGCAGGCATTGACGGCACTGCTTGCAACTCAAGGGGCTGGCTTGGGGCTGACTAATTTATTGGGGACCCTAGGATCAGGTGCTACAGTAAACCCGGCTGTTCCTTCTGCAGGCCATGGAATTCAGGGTGGTTACAGTAACCAACCAAATATAAGCTCGGGTGTTATTGGTGGATATGGAAATCAAAGTGGCTTACAGGGGACTTATCCAAGCCAGCAGGTGGGACAAAGTGGTTCTGGAAGAGGGCAGCATGGTGTTGGCCAATATGGTGGTGTTGCCCCTTACATGGGGCACTAG	1506	0.5086	MGRKRKLTPKPAESVEPPLKQQHQQQQQQQQQQYGPEADQTVDEQDNGADYEEVEVEEEEEVEEEEEEEEEQEPGEGSGHDNANPDPAQNANDQASKVQSTSAAATLVTAQHGKEEEDDEPIHKLLEPFSKEQVLNLLLEAANKHNDVADRVRKVADEDPAHRKIFVHGLGWDTNADTLINVFKQYGEIEDCKAVSDKVSGKSKGYGFILFKSRRGARNALKQPQKKIGNRMTACQLASIGPVQQPTPAQSTPAQPVSEYTQRKIYVSNVGADLSAQKLHVFFSKFGEIEEGPLGLDKVTGKPKGFCLFVYKSVESARKALEEPHKEFEGHILHCQKAIDGPKPGKPQYQQHQNPQRTQFQRNETPSFVGGAATGQGHLMAPAGPGIGFNQQAAAAQTLNPALGQALTALLATQGAGLGLTNLLGTLGSGATVNPAVPSAGHGIQGGYSNQPNISSGVIGGYGNQSGLQGTYPSQQVGQSGSGRGQHGVGQYGGVAPYMGH	501

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr5g01812	501	Gene3D	-	243	374	IPR012677	-
	Accr5g01812	501	MobiDBLite	consensus disorder prediction	18	40	-	-
	Accr5g01812	501	MobiDBLite	consensus disorder prediction	43	75	-	-
	Accr5g01812	501	Gene3D	-	154	241	IPR012677	-
	Accr5g01812	501	MobiDBLite	consensus disorder prediction	83	103	-	-
	Accr5g01812	501	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G	46	340	-	-
	Accr5g01812	501	MobiDBLite	consensus disorder prediction	339	360	-	-
	Accr5g01812	501	SUPERFAMILY	RNA-binding domain, RBD	245	361	IPR035979	GO:0003676
	Accr5g01812	501	Coils	Coil	48	73	-	-
	Accr5g01812	501	MobiDBLite	consensus disorder prediction	469	493	-	-
	Accr5g01812	501	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	265	333	IPR000504	GO:0003723
	Accr5g01812	501	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	165	231	IPR000504	GO:0003723
	Accr5g01812	501	MobiDBLite	consensus disorder prediction	1	103	-	-
	Accr5g01812	501	MobiDBLite	consensus disorder prediction	469	486	-	-
	Accr5g01812	501	SMART	rrm1_1	264	336	IPR000504	GO:0003723
	Accr5g01812	501	SMART	rrm1_1	164	236	IPR000504	GO:0003723
	Accr5g01812	501	SUPERFAMILY	RNA-binding domain, RBD	160	246	IPR035979	GO:0003676
	Accr5g01812	501	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	163	240	IPR000504	GO:0003723
	Accr5g01812	501	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	263	339	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr5g01812	Accr-Chr5	44469233	44470738	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr5g01812	262	380	C2H2 Transcription Factor Family	AT2G19380	32.787	2.09e-12	67.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr5g01812	K12741		-	qsa:O6P43_006267	607.831