Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01801 ATGGGAAGACCTCCTTGCTGCGACAAAGTTGGGATCAAGAAGGGACCATGGACTCCTGAGGAGGATATCATCCTTGTTTCCTACATCCAAGAGCATGGCCCTGGAAATTGGAGATCAGTGCCTACTAATACTGGGTTGTCAAGGTGCAGCAAAAGTTGCAGGCTGAGATGGACAAACTACCTCAGGCCAGGAATCAAGAGAGGGAACTTCACACCTCATGAGGAAGGAATGATAATTCATTTGCAGGCTCTTCTGGGAAATAAATGGGCAGCCATAGCTTCGTACCTACCACAAAGAACAGATAATGATATAAAGAATTATTGGAACACACATCTAAAAAAGAAGCTGAAGAAATTTCAAGCGGCCTTGGACCCCCACCTTGTGTCACCAGACTCAACCACCTCTGCTCAGTTTGTATCTAAGAGCTTTCATGACAGAACAAATTTAGATATGAGTAACAACAACTCTTCGTCTGTTAGACTTAGCCAGTCCCAGTCCCAGTCCTCCTCCACCACCACCTACGCCTCAAGCACTGAGAACATCTCACGCCTCTTACAAGGTTGGATGAGATCATCCCCAAAGCCAGACAACAACAACAGTAATCTTCACCAAGTAACCGAAGACAAGGAGCTTCATCAAAACAACAGCAACAACGTTGACAGCTTTGAAAACAGTAATAAGCCAATGATGGTGAAGTCTGCATCAGTACCTGCTGCTTTAAATTTCGTGTCCTTTCATCATCATCAAGCAAAAGATGAGCAAGAGGGTGGTGGAGATTTGGTGTCCCATGAAGAGTTTGATTCTATTCTGTCGTTTGAGAATTTAAACAATGCTTCTGCTTGGGACAAGTCAACTTGTGATTCTGTTCTTGACAAGAGTTCTGATGAAGCTGCTGCACCTGAGAAGGTTCATGATAATCATAAGCAGAATAGAGCTCCTCCATTGTCGTTTCTTGAGAAGTGGCTGTTTGAGGAAAATGTGGGCCATGAGGAGATGATGGAACTTTCTCCTATGTTCTAA 1020 0.4402 MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQAALDPHLVSPDSTTSAQFVSKSFHDRTNLDMSNNNSSSVRLSQSQSQSSSTTTYASSTENISRLLQGWMRSSPKPDNNNSNLHQVTEDKELHQNNSNNVDSFENSNKPMMVKSASVPAALNFVSFHHHQAKDEQEGGGDLVSHEEFDSILSFENLNNASAWDKSTCDSVLDKSSDEAAAPEKVHDNHKQNRAPPLSFLEKWLFEENVGHEEMMELSPMF 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01801 339 CDD SANT 69 112 IPR001005 -
Accr5g01801 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Accr5g01801 339 MobiDBLite consensus disorder prediction 146 177 - -
Accr5g01801 339 CDD SANT 16 61 IPR001005 -
Accr5g01801 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Accr5g01801 339 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Accr5g01801 339 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Accr5g01801 339 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Accr5g01801 339 FunFam Transcription factor MYB60 68 138 - -
Accr5g01801 339 FunFam MYB-related transcription factor 13 66 - -
Accr5g01801 339 SMART sant 66 114 IPR001005 -
Accr5g01801 339 SMART sant 13 63 IPR001005 -
Accr5g01801 339 Gene3D - 13 66 - -
Accr5g01801 339 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Accr5g01801 339 MobiDBLite consensus disorder prediction 292 311 - -
Accr5g01801 339 Gene3D - 68 183 - -
Accr5g01801 339 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Accr5g01801 339 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 218 - -
Accr5g01801 339 MobiDBLite consensus disorder prediction 292 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01801 Accr-Chr5 44307947 44309334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01801 1 119 MYB Transcription Factor Family AT5G62470 89.916 2.33e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr5g01801 Myb_DNA-binding 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01801 K09422 - gmx:100817854 426.787