Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01793 ATGAGTATTTCACAAAACTTCGCCAATGGGGTGGGTGGTTTCAGTGGGGACGTCAATCTTTTACCCCAAGTTCCTTCTTATGTCTCCCCTCTTCTGGCTCGAACTCCTCCACTTTCACTGTCAAACACTTTTGGTCAGACTGGCAGCGAGATTGGTTTTCAGATTCTGAGCCATTCATTTCCGTCCCAGGAGAGCAGGGGAACAATGAGAGGCCACGGTGGGGCTGATGGACCTTCAGAAGTTCAGAACAAGAGCTTGCCTTTCAAACTTGGCGTGGAGGACATTGAAGCTAAGAGACCTTCTGGCTCGAGAAATGGACGCACAAAGCTCTGTTCTCGAGGCCATTGGAGGCCAGCTGAGGATGCCAGACTCAGAGAGCTTGTAGCTCAGTACGGTCCTCAAAATTGGAACTTGATCGCCGACCATCTCGAAGGAAGATCAGGGAAGAGTTGCAGACTGAGGTGGTTCAACCAGCTAGATCCCAGAATTAACAGGAGGGCGTTCTCCGAGGAAGAAGAGGGGAGATTGTTGTCTGCTCATAGAATGTACGGGAACAAATGGGCTATGATCGCCAAACTGTTTCCTGGGAGGACAGATAATGCAGTGAAGAACCACTGGCACGTGATAATGGCCAGGAAGCTCAGAGAGCTATCAAGTGGTTGTAGGAGGAGGAGGTCTTGTTCTGAAACCATCCGTCCAAAGGCTTTAAATTTGACACTCTCAAATAACGCAGTGAGCGAATCCACCAACTCCAGCAATCTCATAGACGAATCTGCCTCATCCTCCACCGATCTCTCCCTCAGCCCCACAATTTTCCCAAACCCAAGTCCCCAAGGCCACGGATCACCGATGGGTCTCTGCAATGAGATGAAGCTGATAACTGGGAATGTGGGATTCGAAAGGTTGTTCGTGGGTTGGAGTGAAGGAGGAGAACAAATGGAGAAGTTGATGGGTGGAGTGGATCAATCAAATTCAGACTCGAACTCAGAGATGTCAGTTTCTGACTCAGTGACCACAAAGAGGACAAACATCTCAATTTGTGGGGAAAGTGAGAACGTGGGTGATAACATTAACATGCCATTCATTGATTTCCTTGGAGTAGGAGCTGTATGA 1113 0.4879 MSISQNFANGVGGFSGDVNLLPQVPSYVSPLLARTPPLSLSNTFGQTGSEIGFQILSHSFPSQESRGTMRGHGGADGPSEVQNKSLPFKLGVEDIEAKRPSGSRNGRTKLCSRGHWRPAEDARLRELVAQYGPQNWNLIADHLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEGRLLSAHRMYGNKWAMIAKLFPGRTDNAVKNHWHVIMARKLRELSSGCRRRRSCSETIRPKALNLTLSNNAVSESTNSSNLIDESASSSTDLSLSPTIFPNPSPQGHGSPMGLCNEMKLITGNVGFERLFVGWSEGGEQMEKLMGGVDQSNSDSNSEMSVSDSVTTKRTNISICGESENVGDNINMPFIDFLGVGAV 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01793 370 MobiDBLite consensus disorder prediction 62 84 - -
Accr5g01793 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 160 214 IPR017930 -
Accr5g01793 370 Gene3D - 113 164 - -
Accr5g01793 370 ProSiteProfiles Myb-like domain profile. 113 159 IPR001005 -
Accr5g01793 370 PANTHER MYB PROTEIN-RELATED 113 263 - -
Accr5g01793 370 Gene3D - 166 234 - -
Accr5g01793 370 CDD SANT 116 157 IPR001005 -
Accr5g01793 370 ProSiteProfiles Myb-like domain profile. 160 210 IPR001005 -
Accr5g01793 370 SMART sant 164 212 IPR001005 -
Accr5g01793 370 SMART sant 112 161 IPR001005 -
Accr5g01793 370 Pfam Myb-like DNA-binding domain 116 176 - -
Accr5g01793 370 SUPERFAMILY Homeodomain-like 113 206 IPR009057 -
Accr5g01793 370 CDD SANT 167 207 IPR001005 -
Accr5g01793 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 159 IPR017930 -
Accr5g01793 370 FunFam MYB transcription factor 113 164 - -
Accr5g01793 370 MobiDBLite consensus disorder prediction 247 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01793 Accr-Chr5 44222121 44223434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01793 112 370 MYB Transcription Factor Family AT1G69560 46.743 1.48e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr5g01793 Myb_DNA-bind_6 4.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01793 K09422 - gmx:100776882 354.369