Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01748 ATGGAAATTCACTTCCAGCAACCAAAGCAGTTTCAGAAACCATCAGCTGTTCCAATCAGAAGAGGAGGCAAGTTCAAAGGAAGGAACAAAAACAATGGCACAAACAAATTTGTTGGGGTGAGACAAAGACCTTCTGGGAGATGGGTGGCTGAGATCAAAGACACAACCCAGAAGATAAGAATGTGGCTTGGAACATTTGAGACTGCAGAAGAAGCAGCCAGGGCTTATGATGAAGCTGCCTGCCTCCTTCGAGGATCCAACACTCGCACCAACTTCATCACTCGTGTCTCCATGGATTCTCCTCTTGCCTCTCGTATCCGAAATCTGCTTAACAACAGAAAAGGAACCAAAGAACAAGATGTTGATGCTTCTTCCTCACGAGTCAACCCTACTAGCTCTACCAGTACCAGGAGCTCAGAATCAAGCAATGGTGAAAAAAATGATAGTGCTCTTTCTAGTGGAAAAATTCAGAACACCGAACTATTTGCTGAAGGATATAGACCAGATTTGAGCAGTTGCAGGGAGGGGTTTGATTTAGGTTCCCAGTCAAATCTTTCATGGGGCATTGGACCTTTCATTGATCGATTTCCATTTGCTCAAGTATTGGAAGTGCCAAAGTCTGAAGCTGTTGCTGATACATTTGAGTTAGAGATTTCAGAATTTGAGAGGATGAAAGTTGAAAGACAAATATCAGCTTCACTCTATGCAATTAATGGAGTGCATGAATACATGGAAACAGTCCAGGACTCTAACGAAGAAGCTCTTTGGGATCTTCCACCCTTATGGTCAATGTTCTGCTAA 801 0.4307 MEIHFQQPKQFQKPSAVPIRRGGKFKGRNKNNGTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITRVSMDSPLASRIRNLLNNRKGTKEQDVDASSSRVNPTSSTSTRSSESSNGEKNDSALSSGKIQNTELFAEGYRPDLSSCREGFDLGSQSNLSWGIGPFIDRFPFAQVLEVPKSEAVADTFELEISEFERMKVERQISASLYAINGVHEYMETVQDSNEEALWDLPPLWSMFC 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01748 266 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Accr5g01748 266 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Accr5g01748 266 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Accr5g01748 266 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Accr5g01748 266 SUPERFAMILY DNA-binding domain 36 93 IPR016177 GO:0003677
Accr5g01748 266 Gene3D AP2/ERF domain 35 95 IPR036955 GO:0003700|GO:0006355
Accr5g01748 266 MobiDBLite consensus disorder prediction 122 154 - -
Accr5g01748 266 FunFam ethylene-responsive transcription factor RAP2-11 35 94 - -
Accr5g01748 266 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 30 231 - -
Accr5g01748 266 CDD AP2 36 92 IPR001471 GO:0003700|GO:0006355
Accr5g01748 266 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Accr5g01748 266 MobiDBLite consensus disorder prediction 111 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01748 Accr-Chr5 43743425 43744225 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01748 24 266 AP2-EREBP Transcription Factor Family AT5G19790 42.570 6.86e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr5g01748 AP2 5.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01748 K09286 - gmx:100782886 337.806