Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01730 ATGGCAATTGCACGAACTGGAGTCTATGTCGACGACTATTTAGAATACGCGAGTACACTGCCTGCTGAACTTCAAAGGTTGCTCAATACTATCAGAGAGCTCGATGATCGATCCCAATCCATGATAAACCAGACGAGGCAGCAGACAAAGTACTGCTTGGGGATGTCATCACATGGCCATAAGAAGGGTTATCATGGCAGTGGCCATCATTTTAATAATAACAATATGAATGAAGAAGATGACATTGTAATTGAGAAAATGCGAAAAGAAATTGAGGCAAATCAAGATAGTGCATTTAGTCTATGTACTGAGAAGGTTTTACTGGCCAGGCAAGCATATGACCTGATAGATAGCCATGTAAAGCGTCTTGAGGAGGATTTGAACAACTTTGCTGAAGATCTAAAGCAAGAGGGGAAAATACCTCCAGATGAACCAGCAACTCTTCCCCCATTGCCTCTAGTTCTTAAAAGTGAAAACCGCCGGCCCGGATATGGAACACCTCAATCAAAGAGATTTGATTACAGGGATAGAGACTGGGATAGAGAGCGTGATAGGGACTTTGAGCTCATGCCTCCACCAGGAAGCCATAAAAAGGATTATACAGCTCCTGTGGATTTTGATCAACCCATCGATCCTAATGAACCCACGTACTGTGTTTGTCATCAGGTGTCTTTTGGTGATATGATTGCATGTGACAATGAAAATTGCCAAGGAGGCGAATGGTTCCACTATGCATGTGTTGGCCTTACACCAGAGACGAGATTCAAGGGAAAGTGGTATTGCCCAACCTGCAAATTGCTTCCACAGTGTCAATGA 816 0.4338 MAIARTGVYVDDYLEYASTLPAELQRLLNTIRELDDRSQSMINQTRQQTKYCLGMSSHGHKKGYHGSGHHFNNNNMNEEDDIVIEKMRKEIEANQDSAFSLCTEKVLLARQAYDLIDSHVKRLEEDLNNFAEDLKQEGKIPPDEPATLPPLPLVLKSENRRPGYGTPQSKRFDYRDRDWDRERDRDFELMPPPGSHKKDYTAPVDFDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCKLLPQCQ 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01730 271 Gene3D - 5 128 - -
Accr5g01730 271 Coils Coil 120 140 - -
Accr5g01730 271 PANTHER INHIBITOR OF GROWTH PROTEIN 2 265 IPR028651 -
Accr5g01730 271 Coils Coil 24 44 - -
Accr5g01730 271 CDD ING_plant 17 127 - -
Accr5g01730 271 MobiDBLite consensus disorder prediction 136 172 - -
Accr5g01730 271 Pfam Inhibitor of growth proteins N-terminal histone-binding 9 130 IPR024610 -
Accr5g01730 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 209 266 IPR013083 -
Accr5g01730 271 Pfam PHD-finger 217 265 IPR019787 -
Accr5g01730 271 SMART PHD_3 217 265 IPR001965 -
Accr5g01730 271 FunFam PHD finger protein ING 209 267 - -
Accr5g01730 271 SMART ING_2 9 130 IPR024610 -
Accr5g01730 271 MobiDBLite consensus disorder prediction 183 202 - -
Accr5g01730 271 SUPERFAMILY FYVE/PHD zinc finger 198 265 IPR011011 -
Accr5g01730 271 ProSiteProfiles Zinc finger PHD-type profile. 215 267 IPR019787 -
Accr5g01730 271 CDD PHD_ING 217 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01730 Accr-Chr5 43623478 43626769 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Accr5g01730 ING 6.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01730 - - lang:109339676 471.47