Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01718 ATGGAAGAGCCGGTCGTGGTGAACAAAGTTGAAGATCAGCCTCTGGATTTGCCTCCGGGCTTCAGATTCCACCCCACCGATGAGGAAATCATCACTTGTTATCTCACAGAGAAGGTCCTCAACAGCAATTTCAGTGCAACTGCCATCGGCGAGGCCGATTTGAACAAGTCCGAGCCCTGGGACTTGCCCAAGAAAGCCAAGATGGGAGAGAAAGAGTGGTATTTTTTCTGCCAAAGGGACAGGAAGTATCCGACGGGGATGAGGACAAATCGGGCCACCGAGTCCGGTTACTGGAAGGCCACCGGAAAAGATAAAGAGATTTACAAAGGCAAAGGCAACCTCGTTGGCATGAAGAAGACCCTCGTCTTTTACCGAGGAAGAGCTCCTAAAGGAGGAAAGACCAACTGGGTTATGCATGAGTTCAGATTGGAAGGCAGATTCGCCACTTACAATCTCCCCAAAGCTGCCAAGGATGAATGGGTTGTGAGCAAGGTTTTCCACAAGAACTCAGATGTGAAAAAGAACCCAATTCAAGGCCTTTTGAGGATTAACTCTCTCGGTGATGATTTGCTTGACTGTTCCTCACTCCCTCCTCTCATGGATCCTCCTTTCAAGTGCACCAACCCATCCCCACAGCCCATCTCATCGTCTAAACCATCCGACGGCTACTATGCCCCCAACCTCTCCATCATCAACAACAATAATCAGCAGCCGCAGCAGCAGCTGATGATGAAGCCTCAGGCTATGATGATGCCCAACAACAACAATTACACCATCAATCATCAGGCCAATTCCAATTTCTATCCTCATCAGATTCATCAAATCCAAAATCCAACTAGCAGCTTTTCGTTTAATAATAATCCAGGTTATTTGATGAGTAATGATCAGTTTCTGAGAGCATTTTCGGCGAATAATGGCGGCGGCGACGGCGGAGGCTTGTTTGGGTTGGACAAACTGTGCAAGACGGAGCCGTTGGTGTCGACGTCCGGCAACCAGTCTGTGGTGAGTGTGTCGCAGGATACAGGCGTCAGCAACGACATAAACACCGACACTTCCTCCGCTGTCTCTAAGCTCCACATGGGAAAGAACAAGGAATTGTACGACTATCTTGAGGCTCCATCCACTGGGCCCCTCTCTGACTTGGAATGCCTCTGGGATTACTGA 1164 0.4914 MEEPVVVNKVEDQPLDLPPGFRFHPTDEEIITCYLTEKVLNSNFSATAIGEADLNKSEPWDLPKKAKMGEKEWYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIYKGKGNLVGMKKTLVFYRGRAPKGGKTNWVMHEFRLEGRFATYNLPKAAKDEWVVSKVFHKNSDVKKNPIQGLLRINSLGDDLLDCSSLPPLMDPPFKCTNPSPQPISSSKPSDGYYAPNLSIINNNNQQPQQQLMMKPQAMMMPNNNNYTINHQANSNFYPHQIHQIQNPTSSFSFNNNPGYLMSNDQFLRAFSANNGGGDGGGLFGLDKLCKTEPLVSTSGNQSVVSVSQDTGVSNDINTDTSSAVSKLHMGKNKELYDYLEAPSTGPLSDLECLWDY 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01718 387 ProSiteProfiles NAC domain profile. 17 168 IPR003441 GO:0003677|GO:0006355
Accr5g01718 387 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 270 - -
Accr5g01718 387 FunFam NAC domain-containing protein 100-like 26 172 - -
Accr5g01718 387 SUPERFAMILY NAC domain 15 169 IPR036093 GO:0003677|GO:0006355
Accr5g01718 387 Gene3D NAC domain 26 173 IPR036093 GO:0003677|GO:0006355
Accr5g01718 387 Pfam No apical meristem (NAM) protein 18 143 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01718 Accr-Chr5 43537314 43538843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01718 1 214 NAC Transcription Factor Family AT5G18270 70.982 1.58e-112 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Accr5g01718 NAM 2.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01718 - - aprc:113861501 424.091