Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01716 ATGGCTAGCCCCCAGTCCAATTTGCCTCCAGGTTTCAGGTTTCACCCTACTGATGAGGAGCTCATTCTTCACTATCTCAGGAAGAAGGTCGCGTCTTTGCCTATACCCGTTTCCATCATTGCTGAGGTTGATATCTACAAGTTTGATCCCTGGGACTTACCTGAGAAGGCGGCGTTTGGGGATAAGGAATGGTACTTCTTCAGTCCTCGAGACCGCAAGTACCCGAACGGCGCGAGGCCAAACAGGGCGGCCGCTTCAGGGTACTGGAAGGCTACCGGCACTGATAAGAACATAGTGGCGGCGTTGCCGGGAGGAGGATCGGCGGATAGCATGGGGGTGAAGAAGGCTCTGGTGTTCTACACCGGAAAACCCCCCAAGGGCGTTAAGACTAACTGGATCATGCATGAGTATCGCCTCGTCAACAACACCAGAAACAGATCCCCCAAGTTCCAAGACTCCTCCATGAGGTTAGATGATTGGGTTCTCTGCCGAATTTACAAGAGGTCCAGATATGCTGAATCTCCCACTGCAGAAGCAGAGACCTTGGTGGCTGACCAAGATCCCCCAGAAGAGCACATAGTATTACCAGGCTCTCAATCTCCCTCTCCTCCTCAACAAAACAATCTGATTTCTCAGAAATCGTTGTCTTTCTCGAACCTGTTGGATGCCACAGACTTCTCCATATTGAGCAGCTTGTTATCTGACAACTATTCAACCCAACCTGGGTTTGAATCTTCTGCTGCTGCTGATAATTCTAATTCTGAAGTTATCAATCTGAACCAACAATCATTTCAAAACAATCATACCAACAACAGCTATGACTTGTTTCAGAGGACCCCTCTATTGATGAACCATTCCTCCCTCCAAAACATGGAAAAATATAACATGCACAAGCGTCAGATTTCAGGGCTGGATGAGGAAGCCTCGTACCCATCAAAGAGGTATCTGAGCTCATCCTGCAGTTTCCCTAATAACAATACCAATCATCAACTCGACAGCCCACAATGGAACTTCCCCCTCAAGCAGTCGCTGTTGAACCAGCAGTTACTCCTGGGTCCTCATCTTCGTTTTCAGGGATAA 1080 0.4843 MASPQSNLPPGFRFHPTDEELILHYLRKKVASLPIPVSIIAEVDIYKFDPWDLPEKAAFGDKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKNIVAALPGGGSADSMGVKKALVFYTGKPPKGVKTNWIMHEYRLVNNTRNRSPKFQDSSMRLDDWVLCRIYKRSRYAESPTAEAETLVADQDPPEEHIVLPGSQSPSPPQQNNLISQKSLSFSNLLDATDFSILSSLLSDNYSTQPGFESSAAADNSNSEVINLNQQSFQNNHTNNSYDLFQRTPLLMNHSSLQNMEKYNMHKRQISGLDEEASYPSKRYLSSSCSFPNNNTNHQLDSPQWNFPLKQSLLNQQLLLGPHLRFQG 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01716 359 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 284 - -
Accr5g01716 359 Gene3D NAC domain 17 172 IPR036093 GO:0003677|GO:0006355
Accr5g01716 359 ProSiteProfiles NAC domain profile. 8 168 IPR003441 GO:0003677|GO:0006355
Accr5g01716 359 Pfam No apical meristem (NAM) protein 9 139 IPR003441 GO:0003677|GO:0006355
Accr5g01716 359 MobiDBLite consensus disorder prediction 176 209 - -
Accr5g01716 359 SUPERFAMILY NAC domain 4 168 IPR036093 GO:0003677|GO:0006355
Accr5g01716 359 FunFam NAC transcription factor 56 17 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01716 Accr-Chr5 43514537 43515814 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01716 4 359 NAC Transcription Factor Family AT3G04070 49.451 4.97e-101 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Accr5g01716 NAM 8.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01716 - - gmx:100170708 447.203