LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr5g01694	ATGGATTCCCTTAACACCAATCAGAATCACCCATTACAAAGTTCAGCGCTGGCAACCGACGGTGATGCACCTACTGATGCAGGAGATGATGTCAAATTGAGTTCTAGGGACCAAAGAGAAGCTCTACCAGGTGAGCCGAAGTGTGTTCTATGTGGCCGCTATGGTGAGTACATATGTGATGAAACGGATGATGACGTTTGCAGCTTGGAATGTAAACAGAAACTGCTGCGCAGAACTGCCTGCTCTTCATTGCCTGCTGTTACCCGTCCATCTAAAATGCTTGCTGCAACTGATGAGTGCTTTTACGTTAGAGATAATGATTATGAATCAGGTACTCGGTCTAGAGATGAACCTGATATGCTTAGAAAGAAACTTGACATTCATGTGAAGGGTGATGTAGTAGCACCAATATTATCATTCACTAGTTGTAACCTTCCTGATAAGCTCCTCCAAAATATAGAAGCTGCAGGATATGACATGCCTACACCTGTCCAGATGCAAGCAATTCCAGCTGCTTTGACAGGAAAAAGCATGCTTGTTTTGGCTGATACAGGATCTGGAAAGTCTGCTTCATTTTTAATTCCAATTGTGTCTCATTGTGCAAGGCATCGCCTTGAACACCCTTCTGATGAGAAGATGCCATTAGCTATGGTGTTAGCACCTACAAGAGAGCTCTGTATTCAGGTTGAAGAACATGCTAAATTGCTTGGAAAGGGATTGCCTTTTAAAACTGCACTTGTGGTTGGTGGTGATGCCATGGCTGGACAGATCTATCGCATTCAGCAAGGAGTAGAACTGATTGTAGGAACTCCAGGAAGGCTGGTTGATCTTTTAACGAAGCATGAGATTGACTTGGATGGTATGATGACATTTGTTGTGGATGAGGTTGACTGCATGCTGGAAAGGGGTTTCCGAGATCAGGTCATGCAGATATACAAGGCTATGTCCCAGCCCCAGGTCTTGATGTATTCTGCAACAATCTCTCATGAGTTAGAAAAGATGGCAAACTCTCTGGCGAAAGATACTGTGGTTATATCTGTTGGCGAGCCTAATAAACCAAATAAGGCTGTGAAGCAGCTAGCTATTTGGGTTGAGTCAAAGCAGAAGAAGCAGAAGCTGTTTGACATTTTGGTCAGTAAGCAGCATTTTAAGCCACCCATGGTCGTGTATGTGGGGTCTAGACTTGGAGCAGATCTTCTGGCCAATGCCATTATGGTCACCACTGGGATCAAAGCACTGTCAATTCACGGGGAGAAGCCTATGAAGGAAAGGAGAGAAATTATGAGGTCTTTTTTAGTTGGTGAGGTTCCTGTGGTTGTGGCAACTGGAGTTTTGGGTAGAGGGGTTGATCTATTAGGTGTAAAACAGGTAATTGTGTTTGACATGCCTAATTCAATAAAGGAGTATGTACATCAGATTGGAAGGGCGTCTAGAATGGGAGAGGAAGGTCAAGCCATAGTTCTTGTGAATGAGGAGAATAAGAATGTCTTTGCAGAGTTGACTGAAGTTTTAAAATCTGCTGGAGCAGCTGTGCCTCGGGAGCTTGTCAACTCACGATATACCAAGGGATTCTTCTCTGGTGGCAAAGGTCCAAAAAAGAGGAAGAATAGGTCGTGA	1617	0.4403	MDSLNTNQNHPLQSSALATDGDAPTDAGDDVKLSSRDQREALPGEPKCVLCGRYGEYICDETDDDVCSLECKQKLLRRTACSSLPAVTRPSKMLAATDECFYVRDNDYESGTRSRDEPDMLRKKLDIHVKGDVVAPILSFTSCNLPDKLLQNIEAAGYDMPTPVQMQAIPAALTGKSMLVLADTGSGKSASFLIPIVSHCARHRLEHPSDEKMPLAMVLAPTRELCIQVEEHAKLLGKGLPFKTALVVGGDAMAGQIYRIQQGVELIVGTPGRLVDLLTKHEIDLDGMMTFVVDEVDCMLERGFRDQVMQIYKAMSQPQVLMYSATISHELEKMANSLAKDTVVISVGEPNKPNKAVKQLAIWVESKQKKQKLFDILVSKQHFKPPMVVYVGSRLGADLLANAIMVTTGIKALSIHGEKPMKERREIMRSFLVGEVPVVVATGVLGRGVDLLGVKQVIVFDMPNSIKEYVHQIGRASRMGEEGQAIVLVNEENKNVFAELTEVLKSAGAAVPRELVNSRYTKGFFSGGKGPKKRKNRS	538

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr5g01694	538	MobiDBLite	consensus disorder prediction	1	20	-	-
	Accr5g01694	538	SMART	ultradead3	157	360	IPR014001	-
	Accr5g01694	538	Pfam	Helicase conserved C-terminal domain	371	480	IPR001650	-
	Accr5g01694	538	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	169	345	IPR014001	-
	Accr5g01694	538	CDD	SF2_C_DEAD	357	489	-	-
	Accr5g01694	538	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	138	166	IPR014014	GO:0003724
	Accr5g01694	538	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	356	519	IPR001650	-
	Accr5g01694	538	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	289	494	IPR027417	-
	Accr5g01694	538	SMART	helicmild6	398	480	IPR001650	-
	Accr5g01694	538	Pfam	HIT zinc finger	46	72	IPR007529	-
	Accr5g01694	538	PANTHER	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	136	516	-	-
	Accr5g01694	538	Gene3D	-	351	535	IPR027417	-
	Accr5g01694	538	MobiDBLite	consensus disorder prediction	1	38	-	-
	Accr5g01694	538	Gene3D	-	105	349	IPR027417	-
	Accr5g01694	538	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	126	347	IPR027417	-
	Accr5g01694	538	FunFam	DEAD-box ATP-dependent RNA helicase 41	28	85	-	-
	Accr5g01694	538	Gene3D	-	27	83	-	-
	Accr5g01694	538	Pfam	DEAD/DEAH box helicase	162	333	IPR011545	GO:0003676\|GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr5g01694	Accr-Chr5	43257789	43259775	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr5g01694	132	512	Eukaryotic Initiation Factors Gene Family	AT3G19760	27.720	1.32e-54	187

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr5g01694	K19466		-	gmx:100781473	824.698