LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr5g01625	ATGGAGAATTATACCATGCTGTTCCCTGGTCCTACTTCTTCCTCTTCAAGCTTTCAAATGCCAACAAATTCCATGGGAGGCTCTTATTATCATGGATTTAGTAACAACTTTGAGGGCCAAATCTCGAATAGGCTTCTGGGTTTGAGGCCTGGAGTTGAGAAAAAAGGGGAAGTTTCTCATCAGAGCGGAAATGTGAAGGAAGATGAAGGTACGGGGAAAAAGAAAGGAGAGAAAAAGGTTAGAAAGCCAAGATTTGCTTTCCAAACTAGGAGCCAGGTTGACATTCTTGACGATGGCTACAGGTGGAGAAAATATGGTCAGAAAGCTGTTAAAAACAACAAATTCCCCAGGAGCTACTACAGATGTACATATCAAGGGTGCAATGTAAAGAAGCAAGTGCAGCGTCTAACGAAAGACGAAGGGGTAGTGGTGACCACATACGAAGGAGTTCACACTCATCCTATCGACAAGACAACCGACAACTTCGAACACATCTTAAGTCAGATGCATATATACACTCCCTTTTAA	528	0.4261	MENYTMLFPGPTSSSSSFQMPTNSMGGSYYHGFSNNFEGQISNRLLGLRPGVEKKGEVSHQSGNVKEDEGTGKKKGEKKVRKPRFAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTYQGCNVKKQVQRLTKDEGVVVTTYEGVHTHPIDKTTDNFEHILSQMHIYTPF	175

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr5g01625	175	SMART	WRKY_cls	96	155	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Accr5g01625	175	FunFam	WRKY transcription factor 57	82	156	-	-
	Accr5g01625	175	Gene3D	WRKY domain	81	155	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Accr5g01625	175	MobiDBLite	consensus disorder prediction	53	83	-	-
	Accr5g01625	175	SUPERFAMILY	WRKY DNA-binding domain	88	155	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Accr5g01625	175	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	44	158	IPR044810	GO:0003700
	Accr5g01625	175	ProSiteProfiles	WRKY domain profile.	91	156	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Accr5g01625	175	MobiDBLite	consensus disorder prediction	53	76	-	-
	Accr5g01625	175	Pfam	WRKY DNA -binding domain	97	154	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr5g01625	Accr-Chr5	42453452	42454925	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr5g01625	84	175	WRKY Transcription Factor Family	AT5G13080	85.870	1.11e-57	176

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Accr5g01625		WRKY	2.4e-26	CL0274