Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01605 ATGGTGAAATACTCAAGAGAGCCTGACAATCCCACCAAGTCTTGCAAAGCCCGAGGTTCAGAACTCAGAGTTCATTTTAAGAACACAAGGGAGACAGCCTTCGCAATCAGGAAGTTGCCCTTGGTCAAGGCTAAAAGGTATCTGGAAGATGTTATTACTCACAAACAAGCCATTCCCTTTCGACGGTATTGTGGTGGAGTAGGCCGCACTGCACAAGCCAAAAACCGTCATTCAAATGGTCAAGGACGCTGGCCTGTCAAATCAGCAAAGTTTATCCTTGATCTGTTGAAAAATGCTGAAAGTAATGCAGAAGTGAAAGGTCTTGATGTCGATGCACTCTACATTTCCCACATTCAGGTAAATCAAGCTCAGAAGCAGAGGCGCCGTACCTACCGTGCTCATGGGAGAATTAACCCATACATGTCATCACCCTGCCACATTGAGCTGATTTTGTCTGAAAAGGAGGAGCCAGTCAAAAAGGAGCCCGAGACACAGCTGGCTCCCAGGACCAAGAGCTCGTAG 522 0.4713 MVKYSREPDNPTKSCKARGSELRVHFKNTRETAFAIRKLPLVKAKRYLEDVITHKQAIPFRRYCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAPRTKSS 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01605 173 NCBIfam 50S ribosomal protein L22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Accr5g01605 173 PANTHER 60S RIBOSOMAL PROTEIN L17 1 172 IPR005721 GO:0003735|GO:0006412|GO:0015934
Accr5g01605 173 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Accr5g01605 173 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Accr5g01605 173 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Accr5g01605 173 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Accr5g01605 173 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Accr5g01605 173 Gene3D Ribosomal protein L22/L17 1 173 IPR036394 GO:0003735|GO:0005840|GO:0006412
Accr5g01605 173 MobiDBLite consensus disorder prediction 153 173 - -
Accr5g01605 173 FunFam 60S ribosomal protein L17 1 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01605 Accr-Chr5 42350568 42352633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01605 1 171 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 88.889 4.44e-115 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01605 K02880 - tcc:18605090 323.553