Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01562 ATGGCTCGTCTCGCAGCAGCTTGCTTTCTTCTTCTCTCTTACTCTCTCATTGTTTCCTGCGTCGTAGCAGTTCAAGACCCCGAGCTAGTTGTACAAGACGTACACAGAAGAATCAATGCTTCTAGAAGGAATTTGGGGTATTTATCGTGTGGAACCGGCAACCCCATTGACGACTGCTGGCGGTGCGACCCCAACTGGGAGAGGAACCGGCAGAGGCTAGCCGACTGCGCCATTGGCTTCGGCAAGGACGCCATCGGCGGAAGAAACGGTCGGGTCTACGTGGTGACGGACTCCGGCGACGACGACCCGGTGAACCCAAAGCCAGGAACGTTGAGATATGCCGTCATACAAGACGAGCCGTTGTGGATTATCTTTAAGAGGGACATGGTGATAACACTAAAGCAAGAGCTGGTGATGAACTCGTTCAAGACCATTGACGGGAGAGGAGCGAGCGTTCACATTGCCGGCGGCGGATGCTTAACGATACATTACGTCAGCAACATTATCATCCACGGCATTCACATTCATGATTGTAAGCCCACCGGACATGGTGATATCAGAGACTCTCCTCACCATTATGGGTGGTGGACGGTGTCGGACGGCGACGGAATCTCGATATTTAATTCTAGGCATATCTGGGTTGACCATTGCTCGCTCTCTAATTGCCGCGACGGTCTCATTGACGCTATCCATGGATCCACCGCCATCACCATCTCCAACAACTACATGACTCACCACGATAAAGTCATGCTCTTGGGCCACAGTGATTCTTACACTCAGGACAAGAACATGCAGGTCACTATCGCCTTCAACCACTTCGGAGAAGGCCTCATCCAGAGAATGCCAAGGTGTAGGCACGGGTATTTTCATGTGGTGAACAATGATTATACACACTGGGAAATGTATGCGATAGGTGGGAGTGCTAATCCGACGATAAACAGCCAGGGGAATAGGTTTCTGGCACCAGATAATAGGTTTAGCAAGGAGGTGACCAAGCACGAGGATGCTTCAGAGGGAGAGTGGAGGAACTGGAACTGGAGATCCGACGGTGACTTGTTCTTGAACGGAGCTTATTTCCGGCAATCCGGTGCTGGAGCTTCTTCCAGCTACGCTAGGGCTTCAAGTCTCAGTGCAAGGCCTTCTTCTCTTGTTGGCTCCATGACCGTTACGGCTGGTGTACTCACGTGCAGGAAGGGCGTGCGTTGCTGA 1209 0.5186 MARLAAACFLLLSYSLIVSCVVAVQDPELVVQDVHRRINASRRNLGYLSCGTGNPIDDCWRCDPNWERNRQRLADCAIGFGKDAIGGRNGRVYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFKRDMVITLKQELVMNSFKTIDGRGASVHIAGGGCLTIHYVSNIIIHGIHIHDCKPTGHGDIRDSPHHYGWWTVSDGDGISIFNSRHIWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDNRFSKEVTKHEDASEGEWRNWNWRSDGDLFLNGAYFRQSGAGASSSYARASSLSARPSSLVGSMTVTAGVLTCRKGVRC 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01562 402 SMART amb_all 128 325 IPR002022 -
Accr5g01562 402 Gene3D - 53 395 IPR012334 -
Accr5g01562 402 PRINTS Pollen allergen Amb family signature 76 93 IPR018082 -
Accr5g01562 402 PRINTS Pollen allergen Amb family signature 302 321 IPR018082 -
Accr5g01562 402 PRINTS Pollen allergen Amb family signature 136 152 IPR018082 -
Accr5g01562 402 PRINTS Pollen allergen Amb family signature 280 299 IPR018082 -
Accr5g01562 402 PRINTS Pollen allergen Amb family signature 200 221 IPR018082 -
Accr5g01562 402 PRINTS Pollen allergen Amb family signature 373 396 IPR018082 -
Accr5g01562 402 PRINTS Pollen allergen Amb family signature 100 125 IPR018082 -
Accr5g01562 402 PRINTS Pollen allergen Amb family signature 344 368 IPR018082 -
Accr5g01562 402 SUPERFAMILY Pectin lyase-like 35 396 IPR011050 -
Accr5g01562 402 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Accr5g01562 402 PANTHER PECTATE LYASE 18-RELATED 25 399 IPR045032 GO:0030570
Accr5g01562 402 Pfam Pectate lyase 134 319 IPR002022 -
Accr5g01562 402 FunFam Pectate lyase 53 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01562 Accr-Chr5 41872306 41873699 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01562 12 402 Polysaccharide Lyase AT5G63180 75.495 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01562 K01728 - zju:107415231 721.85