Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01543 ATGGCTAGGAGCTGGCTTATTGATGTTGGAGGCTTTGCGAAGAAAGTGAAAAGCAGTTCTCTGCCCTCAGCTGAGCAAATCAAAGACTGTGGGGCATATCGTGAATGTCCAAATTGTCACTGGCATATTGATAATAGTGATGTTTTCCCCAAATGGCCTGGCTTTCCTGTTGGTGTAAAATTTGATCCTTCTGATATAGAACTCTTGGAACATTTGGCAGCAAAATGTGGCATTGGAAATGCAGAACAGCACATATTCATCCATGAGTTCATTCCAACGCTGGAGGGTGATGAGGGTATTTGCTACACTCATCCAGAAAATCTTCCAGGTGCTAAAAAAGATGGGAATAGTGTTCATTTCTTTCATAGAGCCATTAATGCCTACGCAAGTGGTCAACGAAAACGTCGAAAGATTCATCATTATCATGCTGCAACTGAGGAGCATGTGCGGTGGCACAAGACTGGTAAGACCAAATCTGTGATGGATGGTGGCATACACAAAGGCTTTAAAAAGATCATGGTTCTTTATATAAGACCCGAGAAAGGTTCAAAGCCATATAAATCCAACTGGGTGATGCATCAATACCATTTGGGGACTGAAGAAGAGGAGAAGGAAGGTGAATATGTGGTCTCAAAGGTTTTTTATCAAAGGAAGCAGCCCGAGAAAAATGAGGAGAATCCATTAGTTGAAGAATCAGATAATATGACATTACGAACAAGTCCAAGAACCCCAAATCCAAATCCTCGCAATCCACCTCGACCAGGAAATTCTGCTGACTGTGATGATAATTTTGATGAGAGAGTGCTTCTGCCATTTAACAAGGAGGCCGAGTCTATCCCTGGAAAGCCAAGTGCCCTACCAATTGATGTCCAGGATGAGGGTGATACAAGTGGCCCTGCATGGTTGGCTGGTGAATCACAAGCTGACTTTGATGGCTTGGATGACTTATTATGCAAGGAGATCTTTGATTCTTCTGCTCAATTAAATGATTATGGAATGAACTCCATCACTGTCAATGGCTTTGCCAGCAACTCAAACTTGTTAGCCAGAAATGACAATGCATCCTTTGGAATCTCTGACCTGGATAACCTGGAATTGGGTACTCCTCCAGATTTCCAACTTTCTAACTTGCAGTTTTGTTCTCAAGACAGTGTGCTTGATTGGATAGACAAATTGTGA 1179 0.4241 MARSWLIDVGGFAKKVKSSSLPSAEQIKDCGAYRECPNCHWHIDNSDVFPKWPGFPVGVKFDPSDIELLEHLAAKCGIGNAEQHIFIHEFIPTLEGDEGICYTHPENLPGAKKDGNSVHFFHRAINAYASGQRKRRKIHHYHAATEEHVRWHKTGKTKSVMDGGIHKGFKKIMVLYIRPEKGSKPYKSNWVMHQYHLGTEEEEKEGEYVVSKVFYQRKQPEKNEENPLVEESDNMTLRTSPRTPNPNPRNPPRPGNSADCDDNFDERVLLPFNKEAESIPGKPSALPIDVQDEGDTSGPAWLAGESQADFDGLDDLLCKEIFDSSAQLNDYGMNSITVNGFASNSNLLARNDNASFGISDLDNLELGTPPDFQLSNLQFCSQDSVLDWIDKL 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01543 392 Pfam No apical meristem (NAM) protein 56 197 IPR003441 GO:0003677|GO:0006355
Accr5g01543 392 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 291 IPR044799 GO:0003700
Accr5g01543 392 FunFam NAC domain-containing protein 8 64 220 - -
Accr5g01543 392 MobiDBLite consensus disorder prediction 219 263 - -
Accr5g01543 392 Gene3D NAC domain 65 220 IPR036093 GO:0003677|GO:0006355
Accr5g01543 392 ProSiteProfiles NAC domain profile. 55 216 IPR003441 GO:0003677|GO:0006355
Accr5g01543 392 SUPERFAMILY NAC domain 40 216 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01543 Accr-Chr5 41697958 41701153 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01543 32 222 NAC Transcription Factor Family AT4G28500 54.404 4.14e-63 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Accr5g01543 NAM 1.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01543 - - gmx:100780442 553.132