Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01514 ATGGACTCCGGCAATCTTTTCTTCGAGTCTTCCGCTTGCCGCGGGACCATGCTGTTCCTCCGAAATGGTGACATTAGATTTGGAGGAAGTTCGATGATGAGCACGGATGAAACCTCAAAGAAACGACCTTTCTTCAGCTCATCGGAGGAACTGTTCGACGAGGAATATTTTGATGAGCAACTGCCAGAGAAGAAGCGTCGTCTCACTCCCGAGCAGGTTCTTCTGTTGGAGAAAAGCTTTGAGGCGGAGAACAAACTGGAGCCAGTAAGGAAGACCCAGCTGGCGAATAAGCTGGGATTGCAGCCCAGGCAGGTTGCCGTGTGGTTTCAGAACCGCAGGGCTCGGTGGAAGACCAAGCAACTTGAAAGGGATTTTGATACTCTCAAGTCTTCCTACGACTCACTCCTTTTAAAATATGAATTCACTGCGAAGGAGAATGAAAAGCTGAAATCTGAGGTGTTATCACTGAATGAGAAGCTTCAAGCAAAGGATGTACCTATGGCACCTATACTCGATCAAAAAATTGACCCTCTTCCAGTGGAGACAGCCCAATTTTCAGCCCTGCCATTTAGCACGAGGGTAGAGGATCGTCTGAGCACGGGGAGTGGTGGAAGCTCAGTTGTGGACATGGATAGCTCACAGCTTGTTGTGGAGAGTGGTGATTCATACTTTCCGGCTAACAGCTATACCGGATACGTTGCCTGTGTTAAAGGGGTTCAGTCGGAGGATGATGATGGGAGCGACGATGGACGGAGCTACTTCTCAGATGTGTTCGTGGCCCCTGAATCACATGGGCAAAACCATGACGCATTGGGCTGGTGGGTTTGGTCTTAA 834 0.494 MDSGNLFFESSACRGTMLFLRNGDIRFGGSSMMSTDETSKKRPFFSSSEELFDEEYFDEQLPEKKRRLTPEQVLLLEKSFEAENKLEPVRKTQLANKLGLQPRQVAVWFQNRRARWKTKQLERDFDTLKSSYDSLLLKYEFTAKENEKLKSEVLSLNEKLQAKDVPMAPILDQKIDPLPVETAQFSALPFSTRVEDRLSTGSGGSSVVDMDSSQLVVESGDSYFPANSYTGYVACVKGVQSEDDDGSDDGRSYFSDVFVAPESHGQNHDALGWWVWS 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01514 277 PRINTS Lambda-repressor HTH signature 99 115 IPR000047 GO:0003677
Accr5g01514 277 PRINTS Lambda-repressor HTH signature 90 99 IPR000047 GO:0003677
Accr5g01514 277 Pfam Homeodomain 64 117 IPR001356 GO:0003677
Accr5g01514 277 CDD homeodomain 64 120 IPR001356 GO:0003677
Accr5g01514 277 Gene3D - 58 126 - -
Accr5g01514 277 Coils Coil 132 159 - -
Accr5g01514 277 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Accr5g01514 277 SUPERFAMILY Homeodomain-like 59 121 IPR009057 -
Accr5g01514 277 SMART HOX_1 62 123 IPR001356 GO:0003677
Accr5g01514 277 FunFam homeobox-leucine zipper protein ATHB-6-like 67 113 - -
Accr5g01514 277 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 50 221 IPR045224 GO:0003700
Accr5g01514 277 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Accr5g01514 277 Pfam Homeobox associated leucine zipper 119 161 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01514 Accr-Chr5 41385785 41388377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01514 1 276 Homeobox Transcription Factor Family AT3G01470 52.265 1.29e-81 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Accr5g01514 Homeodomain 2.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01514 K09338 - qsa:O6P43_008987 353.599