Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01507 ATGTATGAGTGGTTTTTTAACCACACCCATTTGAAGATGGCCTGGATACCTCAGCGAATCCAGGAGAAAGATGGGTATTTGAATTACCCACCACCGGTTTTGCCTTCATATCCATCTCCTTTCCCAGGTTCTCTCCGCAATGAATCAATGCAGTCTTCGTCTTCACCTTCATCTGGTGGCAGTACTAGAATTAGTCCGGCTGTTCTTTTCGTTATTGTGATTCTGGCCTTGCTGTTCTTCGTATCTGGTCTGCTTCATCTGCTTGTTAGATTTCTCGCAAAGCACCCATCATCAGCTGGTCCATCGGCTCAATCCAATGGACACCAGGACATGGCTGGCTCCGATGCTTTGCAGAGACAGCTGCAACAGCTTTTCCATCTCCACGACTCGGGGCTGGATCAAGCTTTTATTGATGCGCTTCCTGTTTTCCAGTATAGAGAAATTGTGGGTCTGAAAGAACCATTTGACTGTGCAGTTTGTCTCTCTGAATTCTCTGCAAACGATAAGCTCAGGCTGCTTCCTACTTGCAGCCATGCCTTTCACATTGATTGCATAGACACCTGGCTTCTATCCAACTCGACATGTCCACTCTGTAGAGGAACTTTGTTCTCCCCAGGACTCTCTGTCGAAAACCCGATGTTTTATTTTGATGATATGAGGGAAGAAGATGGTTGCCCTTGCAATGGAGAAAGTGGGGTAACTCCCAGACAAAAAGCTGTGGAAATTGAAGAAATTGTAGAGAAAGCGGTTCTTCCTGTAAGACTTGGTAAATTCAGAAGGCTTGATATGGATGCGGGGGATAATGCAGGAGGTGAAACCAGTAGCAGCAATTTGGATGCAAGAAGATGTTTCTCAATGGGGTCTTACCAGTATGTGCTTGGCAATTCAGACCTGCGAATTACCTTGAACGGTGACAGAAAGCTCTCCGAAGGAACAGAACAGACTGATAAGCTTTCAACGGAGGGTGATAAGGAAGGCCAAAAGATTACTAGTGTGAGTAAGGGTGAGAGCTATTCTGTTTCAAAAATCTGGCTGTGGTCCAACAAGGGAAAATTCTCAAGTTCTTCAAATGATCACATGGGCATGCCATCTTCTCTCAACACAGATTTGCCATGGATGAGAACGGAAGGGACCTAA 1137 0.4547 MYEWFFNHTHLKMAWIPQRIQEKDGYLNYPPPVLPSYPSPFPGSLRNESMQSSSSPSSGGSTRISPAVLFVIVILALLFFVSGLLHLLVRFLAKHPSSAGPSAQSNGHQDMAGSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYREIVGLKEPFDCAVCLSEFSANDKLRLLPTCSHAFHIDCIDTWLLSNSTCPLCRGTLFSPGLSVENPMFYFDDMREEDGCPCNGESGVTPRQKAVEIEEIVEKAVLPVRLGKFRRLDMDAGDNAGGETSSSNLDARRCFSMGSYQYVLGNSDLRITLNGDRKLSEGTEQTDKLSTEGDKEGQKITSVSKGESYSVSKIWLWSNKGKFSSSSNDHMGMPSSLNTDLPWMRTEGT 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01507 378 SMART ring_2 157 198 IPR001841 -
Accr5g01507 378 MobiDBLite consensus disorder prediction 353 378 - -
Accr5g01507 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 204 IPR013083 -
Accr5g01507 378 ProSiteProfiles Zinc finger RING-type profile. 157 199 IPR001841 -
Accr5g01507 378 MobiDBLite consensus disorder prediction 309 330 - -
Accr5g01507 378 Pfam Ring finger domain 156 199 IPR001841 -
Accr5g01507 378 FunFam RING-H2 finger protein ATL46 119 204 - -
Accr5g01507 378 SUPERFAMILY RING/U-box 136 205 - -
Accr5g01507 378 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 60 344 - -
Accr5g01507 378 CDD RING-H2_EL5-like 156 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01507 Accr-Chr5 41231110 41232246 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01507 53 356 C3H Transcription Factor Family AT2G18650 41.593 5.69e-57 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01507 - - qsa:O6P43_004596 529.25