Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01506 ATGTCGAGGAACATGTATGAGTGGTTTTTTAACCACACCCATTTGAAGATGGCCTGGATACCTCAGCGAATCCAGGAGAAAGATGGGTATTTGAATTACCCACCACCGGTTTTGCCTTCATATCCATCTCCTTTCCCAGGTTCTCTCCGCAATGAATCAATGCAGTCTTCGTCTTCACCTTCATCTGGTGGCAGTACTAGAATTAGTCCGGCTGTTCTTTTCGTTATTGTGATTCTGGCCTTGCTGTTCTTCGTATCTGGTCTGCTTCATCTGCTTGTTAGATTTCTCGCAAAGCACCCATCATCAGCTGGTCCATCGGCTCAATCCAATGGACACCAGGACATGGCTGGCTCCGATGCTTTGCAGAGACAGCTGCAACAGCTTTTCCATCTCCACGACTCGGGGCTGGATCAAGCTTTTATTGATGCGCTTCCTGTTTTCCAGTATAGAGAAATTGTGGGTCTGAAAGAACCATTTGACTGTGCAGTTTGTCTCTCTGAATTCTCTGCAAACGATAAGCTCAGGCTGCTTCCTACTTGCAGCCATGCCTTTCACATTGATTGCATAGACACCTGGCTTCTATCCAACTCGACATGTCCACTCTGTAGAGGAACTTTGTTCTCCCCAGGACTCTCTGTCGAAAACCCGATGTTTTATTTTGATGATATGAGGGAAGAAGATGGTTGCCCTTGCAATGGAGAAAGTGGGGTAACTCCCAGACAAAAAGCTGTGGAAATTGAAGAAATTGTAGAGAAAGCGGTTCTTCCTGTAAGACTTGGTAAATTCAGAAGGCTTGATATGGATGCGGGGGATAATGCAGGAGGTGAAACCAGTAGCAGCAATTTGGATGCAAGAAGATGTTTCTCAATGGGGTCTTACCAGTATGTGCTTGGCAATTCAGACCTGCGAATTACCTTGAACGGTGACAGAAAGCTCTCCGAAGGAACAGAACAGACTGATAAGCTTTCAACGGAGGGTGATAAGGAAGGCCAAAAGATTACTAGTGTGAGTAAGGGTGAGAGCTATTCTGTTTCAAAAATCTGGCTGTGGTCCAACAAGGGAAAATTCTCAAGTTCTTCAAATGATCACATGGGCATGCCATCTTCTCTCAACACAGATTTGCCATGGATGAGAACGGAAGGGACCTAA 1149 0.4552 MSRNMYEWFFNHTHLKMAWIPQRIQEKDGYLNYPPPVLPSYPSPFPGSLRNESMQSSSSPSSGGSTRISPAVLFVIVILALLFFVSGLLHLLVRFLAKHPSSAGPSAQSNGHQDMAGSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYREIVGLKEPFDCAVCLSEFSANDKLRLLPTCSHAFHIDCIDTWLLSNSTCPLCRGTLFSPGLSVENPMFYFDDMREEDGCPCNGESGVTPRQKAVEIEEIVEKAVLPVRLGKFRRLDMDAGDNAGGETSSSNLDARRCFSMGSYQYVLGNSDLRITLNGDRKLSEGTEQTDKLSTEGDKEGQKITSVSKGESYSVSKIWLWSNKGKFSSSSNDHMGMPSSLNTDLPWMRTEGT 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01506 382 MobiDBLite consensus disorder prediction 357 382 - -
Accr5g01506 382 FunFam RING-H2 finger protein ATL46 123 208 - -
Accr5g01506 382 Pfam Ring finger domain 160 203 IPR001841 -
Accr5g01506 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 208 IPR013083 -
Accr5g01506 382 SMART ring_2 161 202 IPR001841 -
Accr5g01506 382 MobiDBLite consensus disorder prediction 313 334 - -
Accr5g01506 382 SUPERFAMILY RING/U-box 140 209 - -
Accr5g01506 382 ProSiteProfiles Zinc finger RING-type profile. 161 203 IPR001841 -
Accr5g01506 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 64 348 - -
Accr5g01506 382 CDD RING-H2_EL5-like 160 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01506 Accr-Chr5 41231098 41232246 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01506 57 360 C3H Transcription Factor Family AT2G18650 41.593 6.85e-57 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01506 - - qsa:O6P43_004596 529.25