Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01477 ATGAAGAGAAGTAGGGACGATGCTTATGCTTCTTCTCAATTAAAGCGACCCATGGGTTCTTCACGTGGGGATTCCTATGGCCAATCCCAAATCCCTGGAGGAGGAGGAGTGGGAGGGGGGGCTACTTCACAGAAATTGACTACCAATGACGCTTTATCATATTTGAAGGAGGTGAAAGACATGTTTCATGACCAAAGAGAAAAATATGACACGTTCTTAGAGGTCATGAAAGATTTCAAGGCTCAACGGACTGACACTGCTGGTGTCATAGCAAGAGTGAAGGAACTATTCAAAGGGCATAATAACTTGATTTTTGGATTTAACACCTTCTTGCCTAAGGGGTATGAGATTACACTTGATGAAGATGAGGCTCCTCCAAAGAAAACAGTTGAATTTGAAGAAGCGATAAGCTTTGTGAACAAGATAAAGAAACGATTCCAAAATGATGAGCATGTTTACAAATCATTCTTGGACATTTTGAACATGTACCGCAAAGAGCACAAGGATATTGGTGAGGTCTATAGTGAGGTTGCTACCCTTTTTGAGGACCATTCAGATTTACTTGAGGAGTTTACTAGATTCTTACCAGATACTTCTGCAACGCCTTCTACACAGCATGCTCCTTATGGTCGAAATACATTTCCACGTTTTAGTGAGCGGGGTTCTACAGCACCCATCATACGGTCAATGCAAGTGGAAAAGAACCGTTATCGACGGGAAAGGCTTACTTCTCATGATCGTGATCCAAGTGTTGATCGTCCTGAACTGGACGATGACAAGGCACTAATGAAATCTCACAAGGAGCCGAGGAAGCGTGTTGATAAGGAAAGTAGGGATAGGAAAATTCGTGATCAGGATGACAGAGAACATGATCATGATAATAACAGGGATTTAAAATCACGATTTTCTGACAAAAAGATATCTGTCAAGAAGGCTGAAGGTTTTGGGTTGGCAACTGATTTTGCTTCTTATGATGACAAAGATACCTTAAAGAGCATGTATAACCAAGCATTCAGTTTTTGTGAGAAGGTTAAGGAAAAGTTGGGCAGTTCAGATGACTACCAAACATTCTTGAAGTGCCTTCATATTTTCAGCAATGGAATAATAAAAAGGATTGATTTGCAGAATTTGGTGACTGACTTACTCGGAAAGTACCCTGATCTTATGGATGAGTTCAATGAGTTCTTGGAGCGGTGTGAAAATATTGATGGGTTCCTTGCTGGTGTCATAAGTAAAAAGTCATTAGGCAGTGATGGTCAATTATCCAGAACTTTAAAGTTGGAGGATAGAGACAAAGACCTGAAGCGCGAGATGAATGGAGCTAAAGACAAGGAAAGACACCGGGAAAAATACTGGGGGAAATCCATTCAAGAACTTGACTTGAGTAACTGTCAACTTTGCACTCCAAGCTATCGACTTCTGCCAGAAGATTATCCAATTCCTGTGGCCAGTCAGAGATCTGAGCTTGGTGCCCAAGTATTGAATGATCACTGGGTATCTGTGACCTCAGGAAGTGAGGATTACTCTTTCAAACATATGCGCAGGAATCAGTATGAAGAAAGCTTGTTTAGATGTGAGGATGACAGATTTGAGCTGGACATGTTATTAGAATCTGTAAGCTCAGCTGCCAAATGTGCAGAGGAGTTGTATAATGGCATTAACGAAAATAAGATCAATATGGAGGCTCCAATCTGTATTGAAGATCACTTTAGCGCTCTAAATATAAGGTGCATTGAACGCCTGTATGGAGACCATGGACTTGATGTACTGGACATATTACGAAAAAATCCAACTCATGCACTTCCTGTGATATTGACTCGTCTGAAGCAGAAACAAGAGGAGTGGAGTAGGTGTCGTTCTGATTTCAATAAGGTTTGGGCTGAAATTTATGCTAAAAACCACTACAAATCACTTGATCATCGGAGCTTCTATTTCAAGCAGCAAGATTCAAAGAACTTGAGCACTAAATCTTTGGTGGCTGAAATCAAAGAAAAGAAAGCAAAGCAGCAGAAAGAATATGATATTCTTCAGGCTATCGCTGCTGGAAATAAACAGCCTTTAATTCCACATCTAGAGTTTGAATATTCGGATGTTGGGATTCATGAGGACCTATATAAACTTGTTCGTTATTCATGTGAGGAGGTCTTCTCAAGTAAAGATATGTCAAATAAAATTATGAGACTTTGGACTACTTTTTTGGAGCTGATACTTGGTGTTCCCTCTCGTACTCATGGGACAGAAAATGTGGAGGACAGGAAAAATATGCAACGTGTTGCCCATTTTGTTTCATCAAATACAGGAGGTGATGGCAACTCCAACGGAGATTCTGCTCTAATGAATTCAAGGTTGCCAAAATCTGATAATGAAGTGGATGGTAGAGTAAATGAGGTAAAGAATGGCCAACAGTCTAGTTTAGCTGCCAATGACAAAGAAAATGGACCTGTTGACTCTGACCGTGCTTGTAGAGATGATCATCTAATGGATAAAGGGAAGAACAATGCAGATTGTAGTGAAAAAATCTCTGGGTTTAGTAAACAGGTTGCCTCTGATGAGCAATCAGCTATCAATAACACTTTAATTGCAGTTAGAGGAGAAACCAGCATGACCAAGACCAGCTTAGAAATTGCTTCAGGAAGACCAACTGCTACACTAGGCGGTGATGATGGTGTTGCCATTTCTCAGGGTGGTAGTGGACCTTTGATGGAGGGACGGGATACTGCTCCTCCACTTCCACTAACCAATGGAGTGCTAATTGAAAGCAAAATGGTCAAAAGTCATGAAGAATCTGCCAGACCTTACAAAGCTGAAAAGGAGGAGGGTGAATTATCACCCATTGCTGACTCAGAGGAGGATAATTTTGTTGGGTATGGAGACTCCAGCAGGCAGGCACTGCCCAAGTCAAAGCATAATATTGAAAGAGGTAATTATAAATCTAGAAATGGCGAGGAAGAATGCTGCCCAGATGCTGGAGGTGATAATGGTGCATATGCTGATGATGAGGACAGTGATAATGTTTCTGAAGCTGGTGAAGATGCCTCAGGTAGTGAGTCTGCTGGTGATGCATGCTCTCGGGAAGAGCATGAAGAGGATGAAGATATGGAACGTGATGATGTTGAGGGTAAGGCTGAGAGTGAAGGTGAAGCTGAGGGCATATGTGATGCACAATCTGCTGGAGGAGAGGGCTCGTCATTGCCATTGTCAGAAAGGTTCCTTTTGTCAGTAAAGCCTCTCATGAAGCATGTTTCCACACTTTCACTCGTTGAGGAAAGAAATAATTCCAGGCTTTTCTATGGGAATGATGATTTTTTTGTTCTTTTTAGGCTTCATCATATACTTTATGAAAGGATCTCATTAGCCAAAAAATATTCACTGAGTGCCGAACCAAAATGGAAAACAACAAAGGAGGCTTCTTCCCCAGATCCTTATTCAAGATTTATGAATGCACTTTACAACTTGCTTGATGGCTCTGCTGACAATGTAAAGTTTGAAGATGAATGCCGAGCAATAATTGGAAACCAGTCATATGTATTATTTACATTGGACAAGTTGATATATAAGTTGGTCAGACAGCTTCAAGCAGTTGTAACAGATGAGATAGACAATAAACTTCTCCAATTATATGAGTATGAAAAGTCACGGAAACAGGGGAAATTAGCTGATTCAGTCTATTATGCAAATGCACGTGTCATCCTTCATGATGAGAATATATATCGGTTTGAATGTTCATGTACTCCCTCTCAAGTGTTGGTTCAGCTGATGGACAATATGAATGAAAAGCCTGAGGTGTTTGCTGTTTCAATCGATCCAAATTTTTCCTTTTATCTGTATAACGATTTTCTGTCTGTCTCTCCTGGTAAAAAGGAACCTCATGGCATTATGCTGCAAAGAAACAAGCGCATATACAGAGATCTAGATGAACTTGCATCTATGTGTTTAGCCATGGAAGGTGTTAAAATAATTAATGGATTGGAATGTAAGATAGCTTGCAGCTCGTCCAAGATCTCCTATGTTTTGGACACGGAAGATTTTTTCTTCCGCCCCAAAAAGCAAAGAAGAACATCATCATCAGGGACCGCATCTTCCCGGCATCATCGAGCCAGACAGGAAAGATTTCTCAGATTATTATCAGTTTCATAA 4137 0.4068 MKRSRDDAYASSQLKRPMGSSRGDSYGQSQIPGGGGVGGGATSQKLTTNDALSYLKEVKDMFHDQREKYDTFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAISFVNKIKKRFQNDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFEDHSDLLEEFTRFLPDTSATPSTQHAPYGRNTFPRFSERGSTAPIIRSMQVEKNRYRRERLTSHDRDPSVDRPELDDDKALMKSHKEPRKRVDKESRDRKIRDQDDREHDHDNNRDLKSRFSDKKISVKKAEGFGLATDFASYDDKDTLKSMYNQAFSFCEKVKEKLGSSDDYQTFLKCLHIFSNGIIKRIDLQNLVTDLLGKYPDLMDEFNEFLERCENIDGFLAGVISKKSLGSDGQLSRTLKLEDRDKDLKREMNGAKDKERHREKYWGKSIQELDLSNCQLCTPSYRLLPEDYPIPVASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKCAEELYNGINENKINMEAPICIEDHFSALNIRCIERLYGDHGLDVLDILRKNPTHALPVILTRLKQKQEEWSRCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKEKKAKQQKEYDILQAIAAGNKQPLIPHLEFEYSDVGIHEDLYKLVRYSCEEVFSSKDMSNKIMRLWTTFLELILGVPSRTHGTENVEDRKNMQRVAHFVSSNTGGDGNSNGDSALMNSRLPKSDNEVDGRVNEVKNGQQSSLAANDKENGPVDSDRACRDDHLMDKGKNNADCSEKISGFSKQVASDEQSAINNTLIAVRGETSMTKTSLEIASGRPTATLGGDDGVAISQGGSGPLMEGRDTAPPLPLTNGVLIESKMVKSHEESARPYKAEKEEGELSPIADSEEDNFVGYGDSSRQALPKSKHNIERGNYKSRNGEEECCPDAGGDNGAYADDEDSDNVSEAGEDASGSESAGDACSREEHEEDEDMERDDVEGKAESEGEAEGICDAQSAGGEGSSLPLSERFLLSVKPLMKHVSTLSLVEERNNSRLFYGNDDFFVLFRLHHILYERISLAKKYSLSAEPKWKTTKEASSPDPYSRFMNALYNLLDGSADNVKFEDECRAIIGNQSYVLFTLDKLIYKLVRQLQAVVTDEIDNKLLQLYEYEKSRKQGKLADSVYYANARVILHDENIYRFECSCTPSQVLVQLMDNMNEKPEVFAVSIDPNFSFYLYNDFLSVSPGKKEPHGIMLQRNKRIYRDLDELASMCLAMEGVKIINGLECKIACSSSKISYVLDTEDFFFRPKKQRRTSSSGTASSRHHRARQERFLRLLSVS 1378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01477 1378 MobiDBLite consensus disorder prediction 762 791 - -
Accr5g01477 1378 MobiDBLite consensus disorder prediction 923 1048 - -
Accr5g01477 1378 Gene3D Paired amphipathic helix 127 199 IPR036600 GO:0006355
Accr5g01477 1378 MobiDBLite consensus disorder prediction 196 229 - -
Accr5g01477 1378 MobiDBLite consensus disorder prediction 14 28 - -
Accr5g01477 1378 FunFam Paired amphipathic helix protein Sin3 50 112 - -
Accr5g01477 1378 MobiDBLite consensus disorder prediction 1 43 - -
Accr5g01477 1378 FunFam Paired amphipathic helix SIN3-like protein 127 198 - -
Accr5g01477 1378 SUPERFAMILY PAH2 domain 125 197 IPR036600 GO:0006355
Accr5g01477 1378 Coils Coil 659 679 - -
Accr5g01477 1378 FunFam Paired amphipathic helix protein SIN3 327 401 - -
Accr5g01477 1378 Gene3D Paired amphipathic helix 50 112 IPR036600 GO:0006355
Accr5g01477 1378 PANTHER SIN3B-RELATED 44 1240 IPR039774 GO:0003714
Accr5g01477 1378 MobiDBLite consensus disorder prediction 232 299 - -
Accr5g01477 1378 Pfam Sin3 family co-repressor 467 557 IPR013194 -
Accr5g01477 1378 SMART hdac_interact2seq4b 463 563 IPR013194 -
Accr5g01477 1378 MobiDBLite consensus disorder prediction 762 783 - -
Accr5g01477 1378 ProSiteProfiles PAH domain profile. 128 198 IPR003822 GO:0006355
Accr5g01477 1378 MobiDBLite consensus disorder prediction 965 986 - -
Accr5g01477 1378 ProSiteProfiles PAH domain profile. 330 399 IPR003822 GO:0006355
Accr5g01477 1378 MobiDBLite consensus disorder prediction 798 817 - -
Accr5g01477 1378 SUPERFAMILY PAH2 domain 40 113 IPR036600 GO:0006355
Accr5g01477 1378 Pfam Paired amphipathic helix repeat 67 111 IPR003822 GO:0006355
Accr5g01477 1378 Pfam Paired amphipathic helix repeat 352 396 IPR003822 GO:0006355
Accr5g01477 1378 Pfam Paired amphipathic helix repeat 151 195 IPR003822 GO:0006355
Accr5g01477 1378 Gene3D Paired amphipathic helix 328 401 IPR036600 GO:0006355
Accr5g01477 1378 Pfam C-terminal domain of Sin3a protein 1096 1344 IPR031693 -
Accr5g01477 1378 ProSiteProfiles PAH domain profile. 44 114 IPR003822 GO:0006355
Accr5g01477 1378 SUPERFAMILY PAH2 domain 331 397 IPR036600 GO:0006355
Accr5g01477 1378 MobiDBLite consensus disorder prediction 923 942 - -
Accr5g01477 1378 MobiDBLite consensus disorder prediction 196 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01477 Accr-Chr5 40895750 40907237 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01477 31 147 WRKY Transcription Factor Family AT4G12020 51.695 3.63e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Accr5g01477 Sin3a_C 9.6e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01477 K11644 - gmx:100807181 2033.45