Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01447 ATGGCAGAAAGTAAAGCTAGAGTTATGCTCCTGTTAATGGCTACCTTAGCCATTACAGTTCCATGCCTCGTCAACGCTAACATCGGAGAGTTCGACGATTATCTCCTCGAAAAAGCCAAGGAGGCCCGAAGAATGGCTCTTCAAGCATACGAACCAGACCCTTTGAACGTCACGTATGAGCTCAACATGCACGTTCATCTGGCGATGAATGAAGCCAACATTATCATCAACAACCATACTAGAGGGAGGGACCTTGGGGAGAGGAAGAAGAGAGGACCGTGCATGGCCACCAACCCAATCGATCGATGCTGGAGATGCGACAGAAACTGGGAGATGAATCGCTTTAAGTTAGCCACATGTGCGAAGGGCTTCGGCCACAAAACCACCGGCGGGTTGGGCGGTAAGATCTACGTCGTGACGGATCCTTCCGACGCTGACGTGGTTAACCCGAAACCCGGAACTCTGAGGTACGGAGCCATTCAGATGGAGCCATTGTGGATCATATTCGCGCACAGCATGGTGATCAAGTTGCAACAGGAGTTGCTGATTAATTCCCACAAAACGATCGACGGACGGGGAGCCAATATTCAGATAAAGAGCGGCGGCGGCCTCACTCTGCAATTCGTTAGGAACGTCATCATCCACAACCTTCGCATTCGCAATATCAAAGCTAAGAAGGGTGGTATGATAAGGGACGCCCCGAACCATATTGGGCTGAGAACCAGAAGCGACGGTGACGCCATCAGTATCTTCGGTTCCACCAACATCTGGATCGATCACATTTCCATGTCCAACGCCGACGATGGGCTGATCGACGCCATCATGGGTTCTACCGCCATTACCATATCAAATTGCCACATGACCAGACACAACGATGTGATGCTGTTCGGAGCCGGAGACGTGTATGTACAGGACAAGTTGATGCAGATAACGGTGGCGTTCAACCACTTCGGGAACGGACTGATACAGAGGATGCCGAGATGCAGACATGGGTGGTTCCATGTGGTGAACAACGACTACCACAACTGGATAATGTATGCCATCGGAGGATCGGCGAATCCGACCATACTTAGCCAAGGAAACCGATTCAGTGGTCCAAACAATGAGGCAGCGAAGCAGGTTACGAACAGAGTGGGTGCGCCACCATTTTTGTGGAAAAATTGGCGGTGGCAGTCGGTGGGAGACGAGTTTGTGAACGGAGCTTTTTTTCTACAATCGGGAATACCTATAACTTCAACTGCAACTAATTTCGATAAAGAGAATCTGATACAACCCAGACCTGGGAACGAAGCTCCCCTATTGTCCCGCTATTCCGGTCAACTCAATTGCCGGGCCGGCAAGCCATGTTAG 1350 0.5059 MAESKARVMLLLMATLAITVPCLVNANIGEFDDYLLEKAKEARRMALQAYEPDPLNVTYELNMHVHLAMNEANIIINNHTRGRDLGERKKRGPCMATNPIDRCWRCDRNWEMNRFKLATCAKGFGHKTTGGLGGKIYVVTDPSDADVVNPKPGTLRYGAIQMEPLWIIFAHSMVIKLQQELLINSHKTIDGRGANIQIKSGGGLTLQFVRNVIIHNLRIRNIKAKKGGMIRDAPNHIGLRTRSDGDAISIFGSTNIWIDHISMSNADDGLIDAIMGSTAITISNCHMTRHNDVMLFGAGDVYVQDKLMQITVAFNHFGNGLIQRMPRCRHGWFHVVNNDYHNWIMYAIGGSANPTILSQGNRFSGPNNEAAKQVTNRVGAPPFLWKNWRWQSVGDEFVNGAFFLQSGIPITSTATNFDKENLIQPRPGNEAPLLSRYSGQLNCRAGKPC 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01447 449 PRINTS Pollen allergen Amb family signature 346 365 IPR018082 -
Accr5g01447 449 PRINTS Pollen allergen Amb family signature 388 412 IPR018082 -
Accr5g01447 449 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Accr5g01447 449 PRINTS Pollen allergen Amb family signature 244 265 IPR018082 -
Accr5g01447 449 PRINTS Pollen allergen Amb family signature 120 137 IPR018082 -
Accr5g01447 449 PRINTS Pollen allergen Amb family signature 180 196 IPR018082 -
Accr5g01447 449 PRINTS Pollen allergen Amb family signature 324 343 IPR018082 -
Accr5g01447 449 PRINTS Pollen allergen Amb family signature 144 169 IPR018082 -
Accr5g01447 449 SUPERFAMILY Pectin lyase-like 98 414 IPR011050 -
Accr5g01447 449 Pfam Pectate lyase, N terminus 27 81 IPR007524 GO:0030570
Accr5g01447 449 Pfam Pectate lyase 179 363 IPR002022 -
Accr5g01447 449 SMART amb_all 172 369 IPR002022 -
Accr5g01447 449 PANTHER PECTATE LYASE 18-RELATED 42 447 IPR045032 GO:0030570
Accr5g01447 449 Gene3D - 97 442 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01447 Accr-Chr5 40577956 40579807 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01447 8 449 Polysaccharide Lyase AT1G14420 55.310 2.79e-174 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01447 K01728 - gmx:100780236 576.244