Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01446 ATGCAAAAAGAAATGCCCCTTGTTATAATGGCGTTGTTTGTAATCGCCTTGGCCATTGCATTTCCATGCCTCGAGGCTAACATCGGAGAGCTTGACGAGTACCTCCAAGCAAGAGCAAAGCAAGCCCACCGAGCAGCTCTCGAAGCCTACGAGCCCGATCCTTTGAATGTCACGTCGGAGCTCAACTTCCATGTTCACCTTGCGATGGACGAGGTCAACACTAACACCACTAGAGGGAGGGATCTGAGGGAGAAAAAGAATCGCAAAAAAAGATGCCAAGCCACCAACCCAATCGACCGGTGCTGGAGATGCGATCCCAATTGGGAGAAGAATCGCTTTAAGTTAGCCAGCTGCGCCATGGGTTTCGGCCGCAAGGCCACTGGAGGTTTGGGTGGTAAGATCTACGTCGTCACAGATAGTTCCGACGACGACGTGGTGAACCCAAAACCCGGAACTCTGAGGCACGGAGTGATCCAGAAGGGGCCTCTGTGGATCATATTCGCCCGCAGTATGGTGATCAAGTTGAAGGAGGAGTTGCTGGTGTCATCGGACAAGACAATCGACGGTCGTGGAGCCAATGTCGCCATCAGAAACGGAGCCGGCATCTCTTTGCAGTTCGTCAATAACGTCATCATCCACAATCTTCGCATTCGCAACATCAAACCGAAGAACGGGGGTATAATTAGGGATTCCGTCGACCACCTTTCGCTTCGAACCAGAAGTGACGGCGACGCCATCGGCCTCTTTGGTGCGACCAATATTTGGATCGATCATATCTCCCTCGCCAATGCGGAGGACGGCCTCATCGATGTCATCATGGCTTCAACCGGCGTGACCATCTCAAATTGCCACATGACCAAACACAACGATGTGATGCTGTTCGGAGGTGGTGAAGTATATCGTCAGGACAAGGTGATGCAGGTAACGGTGGCGTTCAACCACTTTGGGAACGGACTGATACAGAGGATGCCGAGATGCAGGTATGGGTTCTTCCACGTGGTGAACAACGATTATACTCACTGGATAATGTACGCCATTGGAGGAAGCTCGGCGCCGACGATACTGAGCCAAGGAAACCGATTCATTGCTCCGAACAACGACGTGACGAAGCTGATCACGAACAGGGTGGGGACGCAACCGTCGGCGTGGAAAGACTGGCAATGGCAATCAGAGATGGATCAGTTGGATAACGGAGCCGTTTTTGTTCAATCGGGAAGTCCGATAACCTCAGTGGACAGAAGCAGTTTGATCCCACCAAGACATGGGATTGAAGCTCCATTGCTCGCAAGATATTCGGGTGCGCTCGCGTGCAGGGCCGGCAAACGTTGTTAG 1332 0.5233 MQKEMPLVIMALFVIALAIAFPCLEANIGELDEYLQARAKQAHRAALEAYEPDPLNVTSELNFHVHLAMDEVNTNTTRGRDLREKKNRKKRCQATNPIDRCWRCDPNWEKNRFKLASCAMGFGRKATGGLGGKIYVVTDSSDDDVVNPKPGTLRHGVIQKGPLWIIFARSMVIKLKEELLVSSDKTIDGRGANVAIRNGAGISLQFVNNVIIHNLRIRNIKPKNGGIIRDSVDHLSLRTRSDGDAIGLFGATNIWIDHISLANAEDGLIDVIMASTGVTISNCHMTKHNDVMLFGGGEVYRQDKVMQVTVAFNHFGNGLIQRMPRCRYGFFHVVNNDYTHWIMYAIGGSSAPTILSQGNRFIAPNNDVTKLITNRVGTQPSAWKDWQWQSEMDQLDNGAVFVQSGSPITSVDRSSLIPPRHGIEAPLLARYSGALACRAGKRC 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01446 443 PANTHER PECTATE LYASE 18-RELATED 42 441 IPR045032 GO:0030570
Accr5g01446 443 Pfam Pectate lyase, N terminus 27 78 IPR007524 GO:0030570
Accr5g01446 443 SMART amb_all 170 367 IPR002022 -
Accr5g01446 443 PRINTS Pollen allergen Amb family signature 178 194 IPR018082 -
Accr5g01446 443 PRINTS Pollen allergen Amb family signature 242 263 IPR018082 -
Accr5g01446 443 PRINTS Pollen allergen Amb family signature 344 363 IPR018082 -
Accr5g01446 443 PRINTS Pollen allergen Amb family signature 322 341 IPR018082 -
Accr5g01446 443 PRINTS Pollen allergen Amb family signature 118 135 IPR018082 -
Accr5g01446 443 PRINTS Pollen allergen Amb family signature 142 167 IPR018082 -
Accr5g01446 443 PRINTS Pollen allergen Amb family signature 386 410 IPR018082 -
Accr5g01446 443 Pfam Pectate lyase 176 361 IPR002022 -
Accr5g01446 443 Gene3D - 95 435 IPR012334 -
Accr5g01446 443 SUPERFAMILY Pectin lyase-like 70 414 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01446 Accr-Chr5 40563703 40565226 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01446 9 443 Polysaccharide Lyase AT1G14420 54.688 1.32e-177 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01446 K01728 - gmx:100785801 600.512