Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01444 ATGGAAATGATAATGCAAATTGAAGAGAGCATAGGAAGAAGTAGGATGTGCATGGAAGGATGTGACTTCCAAGGAACTCGTAGCGTCAAGAGACGAAGAAGAGAGCATGAAGAAGCATCACTTAACTGTGATGATAATCCAAGTCAGAAGAGACAACAAGTTGATCAAAATTCTATTACCCATACCGTGAAGAGAAGTTCAAGATTTCGAGGTGTCAGCAGACACAAATGGACCGGTCGGTATGAGGCTCACCTTTGGGACAAGCTGTCTTGGAATGTAACACAGAAGAAGAAAGGGAAGCAAGGAGCTTATGATGAAGAAGAGTCTGCAGCCAGAGCATATGATTTAGCTGCACTGAAATACTGGGGAACATCAACTTCCACCAATTTTCCGATATCAGATTACATGAAAGAGATAGAGATAATGCAGACTATGACAAAAGAGGAGTATTTGGCCACTTTAAGAAGAAAAAGTAGTGGCTTTTCAAGAGGCGTGTCAAAGTACAGGGGTGTTGCAAGGCACCACCAAAATGGGAGATGGGAAGCAAGGATAGGGAGGGTTTATGGGAACAAATATCTCTACCTTGGCACTTACAGCACCCAGGAGGAAGCTGCTCGTGCTTACGACATTGCGGCCATTGAGTTCAGAGGGATTCATGCTATAACCAACTTTGATTTGAGCAATTACATAACACACTTTGGACCTGCCAGAGGAAATATCCAAGAACCAACACTTGAGTCACAGATTGTACCAGAGGTTCACACAATGACACCTCCTTTTAATCATACTTCAACAGAGGAGTCCAAAACCTTGGCCCTTGACGGCAATTTTCTCAGCACAGATTACCTGAGGTCTTCACCAAAGCAAGAGGTTCTTGAGAAGGAAACTGCTTTTATATCAAGCAGTAAGTCATCTTCACCTACTGCTCTTGGCATTCTTCTCCGTTCTTCAATTTTCAGGGAATTAGTGGAAAAGAATTTGAATATGTTTGGAGATGAAATTGATTTGGAAGACGCAAAGGATCAACAACCACATATATCAGGTGATGATGAGTTGAGTAGAATATTCTATGATAGTATCGGTGATACACCATTTGCCAATGATCCTGAAAGATACGATTTTGTAAGAGATCTCCACGGTTTTATGAACGGAGAAACACAGAATTTGTAA 1170 0.4162 MEMIMQIEESIGRSRMCMEGCDFQGTRSVKRRRREHEEASLNCDDNPSQKRQQVDQNSITHTVKRSSRFRGVSRHKWTGRYEAHLWDKLSWNVTQKKKGKQGAYDEEESAARAYDLAALKYWGTSTSTNFPISDYMKEIEIMQTMTKEEYLATLRRKSSGFSRGVSKYRGVARHHQNGRWEARIGRVYGNKYLYLGTYSTQEEAARAYDIAAIEFRGIHAITNFDLSNYITHFGPARGNIQEPTLESQIVPEVHTMTPPFNHTSTEESKTLALDGNFLSTDYLRSSPKQEVLEKETAFISSSKSSSPTALGILLRSSIFRELVEKNLNMFGDEIDLEDAKDQQPHISGDDELSRIFYDSIGDTPFANDPERYDFVRDLHGFMNGETQNL 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01444 389 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 45 285 - -
Accr5g01444 389 ProSiteProfiles AP2/ERF domain profile. 68 131 IPR001471 GO:0003700|GO:0006355
Accr5g01444 389 CDD AP2 67 133 IPR001471 GO:0003700|GO:0006355
Accr5g01444 389 Gene3D AP2/ERF domain 67 133 IPR036955 GO:0003700|GO:0006355
Accr5g01444 389 Gene3D AP2/ERF domain 166 227 IPR036955 GO:0003700|GO:0006355
Accr5g01444 389 SMART rav1_2 68 137 IPR001471 GO:0003700|GO:0006355
Accr5g01444 389 SMART rav1_2 167 231 IPR001471 GO:0003700|GO:0006355
Accr5g01444 389 ProSiteProfiles AP2/ERF domain profile. 167 225 IPR001471 GO:0003700|GO:0006355
Accr5g01444 389 MobiDBLite consensus disorder prediction 27 44 - -
Accr5g01444 389 FunFam AP2-like ethylene-responsive transcription factor 166 227 - -
Accr5g01444 389 SUPERFAMILY DNA-binding domain 166 227 IPR016177 GO:0003677
Accr5g01444 389 CDD AP2 166 227 IPR001471 GO:0003700|GO:0006355
Accr5g01444 389 SUPERFAMILY DNA-binding domain 67 133 IPR016177 GO:0003677
Accr5g01444 389 MobiDBLite consensus disorder prediction 45 65 - -
Accr5g01444 389 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Accr5g01444 389 PRINTS Ethylene responsive element binding protein signature 207 227 IPR001471 GO:0003700|GO:0006355
Accr5g01444 389 Pfam AP2 domain 166 217 IPR001471 GO:0003700|GO:0006355
Accr5g01444 389 Pfam AP2 domain 67 123 IPR001471 GO:0003700|GO:0006355
Accr5g01444 389 MobiDBLite consensus disorder prediction 27 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01444 Accr-Chr5 40544600 40546561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01444 64 229 AP2-EREBP Transcription Factor Family AT5G57390 68.639 2.06e-80 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Accr5g01444 AP2 6.8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01444 - - gmx:100779867 503.056