Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01413 ATGCAGAGAACAAGGGAAACCCCTGCTGCCCAGAACCAATATGCTGGGGACCACTGCATTGCAAGATTTGCAGACAGTTACCCCCCTGGTTTTCGCAGGAAGGTATTGGCAGAGCTAATAGGGACATATCTATTGGTGTTTGTGACAAGCGGGACGGCTGCACTTAGTTCTTTTGATGACAAGAAAGTATCACAACTAGGAGCTGAACTTGCCGCCGGATTCATTGTCATGGTCATGGTTTATGCCACCGGTCACATCTCCGGCGCCCATATAAACCCAGCTGTCTCCATAGCTTTCGCCGCTGCCGGCCATTTCCCATGGAAACAGGTCCCATTTTACGTGGGAGCTCAAACGACAGGAGGCATTGCTGCCTCTTTTACGCTAAGAGTGTTGTTGCATCCTATAAAAAAGCTGGGAACAAACACCCCTTCTGGAACAGATGCTCAAGCTCTTGTCATGGAGATCCTCATCACTTTCATTCTCATGCTCGTTATCTGCGCCGTCACCACTGATTCCAAAGCTGTTGGAGACCTGGCAGGAGTTGCAATAGGCTTTTCAGTGGCCATAGGAAACATCCTTGGAGGGCCAATATCGGGCGGATCGTTGAATCCAGCAAGAACACTGGGTCCAGCAATAGCAAGTGAGTCCTACAAAGGAATTTGGGTCTATCTAGTTGGACCAACGGTTGGGGCCGTTTTAGGGGCATGGTCCTACAGTGCTATCCAGGACAATGATAATAACCCTGCTTCCTCCATTAACCTAATATCCAAGCTACGCTCCATGAATACTAAGGAAGCCAATGAGCAAGACGATCCACGCGTCATACGTCCATTCAGTGTTTAA 843 0.4899 MQRTRETPAAQNQYAGDHCIARFADSYPPGFRRKVLAELIGTYLLVFVTSGTAALSSFDDKKVSQLGAELAAGFIVMVMVYATGHISGAHINPAVSIAFAAAGHFPWKQVPFYVGAQTTGGIAASFTLRVLLHPIKKLGTNTPSGTDAQALVMEILITFILMLVICAVTTDSKAVGDLAGVAIGFSVAIGNILGGPISGGSLNPARTLGPAIASESYKGIWVYLVGPTVGAVLGAWSYSAIQDNDNNPASSINLISKLRSMNTKEANEQDDPRVIRPFSV 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01413 280 ProSitePatterns MIP family signature. 90 98 IPR022357 -
Accr5g01413 280 PANTHER AQUAPORIN NIP2-1 25 246 IPR034294 -
Accr5g01413 280 PRINTS Major intrinsic protein family signature 72 96 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr5g01413 280 PRINTS Major intrinsic protein family signature 109 128 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr5g01413 280 PRINTS Major intrinsic protein family signature 153 171 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr5g01413 280 PRINTS Major intrinsic protein family signature 184 206 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr5g01413 280 PRINTS Major intrinsic protein family signature 221 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr5g01413 280 PRINTS Major intrinsic protein family signature 33 52 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr5g01413 280 CDD MIP 33 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr5g01413 280 Gene3D Glycerol uptake facilitator protein. 2 250 IPR023271 -
Accr5g01413 280 Pfam Major intrinsic protein 31 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr5g01413 280 NCBIfam MIP family channel protein 37 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr5g01413 280 SUPERFAMILY Aquaporin-like 27 242 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01413 Accr-Chr5 40226343 40228342 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01413 33 271 Major Intrinsic Protein MIP AT5G37820 46.473 1.08e-70 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01413 K09874 - cit:102612686 322.783