Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01405 ATGTCTTCACCAACCGACTCGCCGGAATCATCATCGTCTTCCCCAACCGCTGACGAATTGGAAGACCACCAAATTCGAAGGCTCACTCTGCTTCTCCCTTCCATTTTCAGGTTAGCTGCCCACCGCCGCCACAACCAATTACACGACGAAGATTCCATTAACGATCTTCCCCCCCGGGTCATTCTCTTCAACCCTGCCACCAGAGCCACCGGCATGATCGACCGATCCATTGACTTGGCCTCGCTGCTGGAGGAGGTGTCCACGAAGCCCGGGCTGTTGCCGGCGTCCAAGGATTCCATGGCGGCCATGCCCACCGTCGTGATCACCGAAGAAGAAGATTATGATCAGTGTGCAATTTGCTTGGAAGATTACGTGACTGGGGAGGAGGCTAGGGAGATGCCCTGCAAGCATTGGTTTCACCCTCGTTGCATCGACAAGTGGTTGGGCATTCATGGCGTGTGTCCTGTTTGCCGATTCCCGATGCCCGTGGACATCGAGCTTGACGGTGGTGAAACGACGGAGGGATCGTGA 531 0.5574 MSSPTDSPESSSSSPTADELEDHQIRRLTLLLPSIFRLAAHRRHNQLHDEDSINDLPPRVILFNPATRATGMIDRSIDLASLLEEVSTKPGLLPASKDSMAAMPTVVITEEEDYDQCAICLEDYVTGEEAREMPCKHWFHPRCIDKWLGIHGVCPVCRFPMPVDIELDGGETTEGS 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01405 176 ProSiteProfiles Zinc finger RING-type profile. 117 158 IPR001841 -
Accr5g01405 176 MobiDBLite consensus disorder prediction 1 21 - -
Accr5g01405 176 SMART ring_2 117 157 IPR001841 -
Accr5g01405 176 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 21 162 - -
Accr5g01405 176 Pfam Ring finger domain 115 158 IPR001841 -
Accr5g01405 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 164 IPR013083 -
Accr5g01405 176 MobiDBLite consensus disorder prediction 1 18 - -
Accr5g01405 176 FunFam E3 ubiquitin-protein ligase RNF181 83 164 - -
Accr5g01405 176 SUPERFAMILY RING/U-box 109 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01405 Accr-Chr5 40109660 40110190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01405 26 176 C3H Transcription Factor Family AT1G26800 41.830 8.77e-32 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01405 - - pcin:129305525 215.698