Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01377 ATGGCAAGGAAGAGGAAGGCCATGGAAATTGAGGAAGACAGAAACATGAAATGGGATGAGATGATGAAGGAAGCTGAAGCACTGGGAGTGAGCAGAAGAGCCAGGAAGCGTTTTGTTGGGGTAAGACAAAGGCCTTCTGGAAGATGGGTAGCAGAGATTAAGGATACTATTCAGAAGATCAGGGTTTGGTTGGGAACTTTCGATACTGCAGAGGAAGCTGCTCGAGCTTATGATGAGGCTGCTTGTCTCCTTCGTGGTGCCAACACTAGGACCAATTTCTGGCCTTGTTCTTATTCTTCTTCAAAAACCACTGCTCTTTCCTCCAAGATCACCAATCTCCTCCTTCAGAGGCTCAAAGCAAGGAACAACACTTGCTCTGTTTCTTCTTCTTCTTCTGATACCTTTTCTTCTTCCTCCTCTGTTTCTCCTCTCTCTGATCATCAGCAAGTTGATTTACACAATGAAGAAGCAGCTGCTGATTTTTCTATTGACCAGTTGACTGATTTCCTTAATGATCCTGAAGATTACAGCGCAGGAAACAACAGTGACTTTAATATGTTCACTGATCATAGTGCACAAGTTGAGTCCTTTACCAGTAGTCTGGAATTATGTTTGACTGAAACAGAACAATGCAGGGTAAGAGAAATGGGGTCGGAAAATGACGTCAGGAATGTTGTTGCAGACTGCAGTTCAGGAGGGGAAAGAGAGGAAGAAAGTGAAGAAGAAGAGGAACAAGAAATCACGCACGTGGGTCCGGAGGATTTTGAGTTTGTGGACAAGGTTGCTTCTTCATGTTACTATTCACCGTTTGAGATGGCGGAAGAGATGGAGGAGCCAGTGGTGGTTGAGGCAGAGAGCTACGGCGGCGATGAGCCTTCGATGCTCAGAGCAGCCATGAAGAGGATGAAGTATGAGAGGAAGTTCTCAGCTTCTCTTTATGCATTTAATGGAATATCTGAATGCTTGAAGCTGAAGTTAGGAGGAGAAGGATCTGGAAACTCCAAGGCAAGAGGGGTTTCTGATCATTTAGCTAACCTTAAGGCGGCATGTAGCAGCAAGGAGAAATTCGAGGAAAATAAGGAGCACAAAGAAGAACAAAACACAGTGACATTAAATGAGGCTGAGAGTTCATCATCTTCTACTACTACCAGTGTTGATGGTGAATTGTTGCTTTGGAATTCTCTGGATCTTCCTCCCATATGTTACGTTAACTAA 1215 0.442 MARKRKAMEIEEDRNMKWDEMMKEAEALGVSRRARKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSYSSSKTTALSSKITNLLLQRLKARNNTCSVSSSSSDTFSSSSSVSPLSDHQQVDLHNEEAAADFSIDQLTDFLNDPEDYSAGNNSDFNMFTDHSAQVESFTSSLELCLTETEQCRVREMGSENDVRNVVADCSSGGEREEESEEEEEQEITHVGPEDFEFVDKVASSCYYSPFEMAEEMEEPVVVEAESYGGDEPSMLRAAMKRMKYERKFSASLYAFNGISECLKLKLGGEGSGNSKARGVSDHLANLKAACSSKEKFEENKEHKEEQNTVTLNEAESSSSSTTTSVDGELLLWNSLDLPPICYVN 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01377 404 Coils Coil 346 373 - -
Accr5g01377 404 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
Accr5g01377 404 SUPERFAMILY DNA-binding domain 37 94 IPR016177 GO:0003677
Accr5g01377 404 MobiDBLite consensus disorder prediction 355 369 - -
Accr5g01377 404 MobiDBLite consensus disorder prediction 125 148 - -
Accr5g01377 404 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Accr5g01377 404 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Accr5g01377 404 Coils Coil 8 28 - -
Accr5g01377 404 CDD AP2 36 93 IPR001471 GO:0003700|GO:0006355
Accr5g01377 404 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Accr5g01377 404 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 15 311 - -
Accr5g01377 404 FunFam ethylene-responsive transcription factor RAP2-11 36 95 - -
Accr5g01377 404 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Accr5g01377 404 MobiDBLite consensus disorder prediction 125 150 - -
Accr5g01377 404 MobiDBLite consensus disorder prediction 355 382 - -
Accr5g01377 404 Gene3D AP2/ERF domain 36 94 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01377 Accr-Chr5 39734797 39736011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01377 31 114 AP2-EREBP Transcription Factor Family AT5G19790 70.238 5.38e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr5g01377 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01377 K09286 - gmx:100786711 393.275