Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Accr5g01358 | ATGGAACACACCACTGTGCCTGAATTGCAGCCAAATCCAACGCCAGCGTCCCTCTCTTCTTACCCACCTGCCGCAGCCGCTTATTTTCCCGCATCCTACCCTCCTCATTACCAATTATACTTTCAAAACCCTAATCCTCCTTCTGCAGACCCTCAATCTTCTGCTGGAACCCAAGAATTTCATGGTGGCTCGGGTGCGGAACCTGGGTTGAACCCTCCTGGTGTTACTTCCTATGCCCCCGCGACCTCCGACTCAGTTAGCCATCTGACTCATGAAGCCCATGCTAATTACTCGTATGCTCACAACCCTGTTGCAGATTCGAGCTCCGGATACTATTATGATCCAAATGCTCAGAATTGGGCTGCTAGGGAGGCTGTTATGCAGTTCGGGATGGACCCGGCTGGCTATGGAGCTGCTATCCCCGTGGCCTCAACTGGATCAGAGCAATTGGCTACCTCAAATACGAACACGGCTTGGTGGACTAACACCACAACCCAACCACAGGTAAATGGGGCACGGAAGAAACCTAAGAAACTGAAAATTAAGGTTGTCCAATCTGCATATTGTGAAGTTTGCAAGATAGATTGTACCAGCAAGGATGTTCTGGACCAGCATAAGTTAGGAAAGAAGCACAAGAAGAACTTGGAGAAACTAAAAGAAGCATTAAGGCCGCCACCTCAAGTTCCTGTTCTGCCCAACACGTCATCCAATCCTGTGATAGGACCTCAGCCTCAGCCTGAGGGGGACAATAGCAAATCTGGTGGTGGGAGTAAGAAAAAAAGGAAAGCAACTCAAACACCAGCTGATTTGGAGAACAAGAAAAAGAAGGTTCTTGAAGGTGGGGCTGCTGCAGCAGCAGTTAAAATATGTACTATTTGTAATGTGGTCTGTAATAGCGAGACAGTATTTAACTATCATCTTGCCGGGCAAAAGCATGCTGCTATGTTGAAGAAACAAGCTTCTTAA | 966 | 0.4772 | MEHTTVPELQPNPTPASLSSYPPAAAAYFPASYPPHYQLYFQNPNPPSADPQSSAGTQEFHGGSGAEPGLNPPGVTSYAPATSDSVSHLTHEAHANYSYAHNPVADSSSGYYYDPNAQNWAAREAVMQFGMDPAGYGAAIPVASTGSEQLATSNTNTAWWTNTTTQPQVNGARKKPKKLKIKVVQSAYCEVCKIDCTSKDVLDQHKLGKKHKKNLEKLKEALRPPPQVPVLPNTSSNPVIGPQPQPEGDNSKSGGGSKKKRKATQTPADLENKKKKVLEGGAAAAAVKICTICNVVCNSETVFNYHLAGQKHAAMLKKQAS | 321 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Accr5g01358 | 321 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
| Accr5g01358 | 321 | SUPERFAMILY | beta-beta-alpha zinc fingers | 287 | 319 | IPR036236 | - | |
| Accr5g01358 | 321 | MobiDBLite | consensus disorder prediction | 233 | 252 | - | - | |
| Accr5g01358 | 321 | Pfam | Zinc-finger of C2H2 type | 188 | 211 | - | - | |
| Accr5g01358 | 321 | Pfam | Zinc-finger of C2H2 type | 289 | 312 | - | - | |
| Accr5g01358 | 321 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Accr5g01358 | 321 | MobiDBLite | consensus disorder prediction | 39 | 60 | - | - | |
| Accr5g01358 | 321 | MobiDBLite | consensus disorder prediction | 39 | 87 | - | - | |
| Accr5g01358 | 321 | MobiDBLite | consensus disorder prediction | 219 | 272 | - | - | |
| Accr5g01358 | 321 | Gene3D | Classic Zinc Finger | 257 | 320 | - | - | |
| Accr5g01358 | 321 | Gene3D | Classic Zinc Finger | 168 | 218 | - | - | |
| Accr5g01358 | 321 | SUPERFAMILY | beta-beta-alpha zinc fingers | 183 | 219 | IPR036236 | - | |
| Accr5g01358 | 321 | SMART | ZnF_U1_5 | 184 | 218 | IPR003604 | GO:0003676|GO:0008270 | |
| Accr5g01358 | 321 | SMART | ZnF_U1_5 | 285 | 319 | IPR003604 | GO:0003676|GO:0008270 | |
| Accr5g01358 | 321 | SMART | c2h2final6 | 187 | 211 | IPR013087 | - | |
| Accr5g01358 | 321 | SMART | c2h2final6 | 288 | 312 | IPR013087 | - | |
| Accr5g01358 | 321 | PANTHER | ZINC FINGER PROTEIN 385B-LIKE | 44 | 320 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Accr5g01358 | Accr-Chr5 | 39488586 | 39490291 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Accr5g01358 | 183 | 316 | C2H2 Transcription Factor Family | AT5G61190 | 34.559 | 5.25e-14 | 70.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Accr5g01358 | - | - | qsa:O6P43_009136 | 312.768 |