Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01347 ATGGCATTCATCAACAAGATTGGAAAGCTTCTCAAGCATTCTGCGGTCAAATGCATTAGCCCAGAATTTTCTGTATGTACTCCATCAATTTACCAGGCAATCAGGTCCATGTCATCTGCAAAGCTTTTTATTGGAGGTGTTTCATATAGCACAGACGATATGGGTCTGAGAGAAGCCTTTGCTAGCTATGGAGAGATAATTGATGCAAGGGTTATTATGGATCGTGAGACTGGAAGGTCCAGAGGATTTGGGTTCATAACTTTTGCATCCAGTGAAGAGGCATCTGCTGCTATTCAGGCAATGGATGGTCAGGATCTTCATGGGCGGAGGATACGGGTAAACTATGCTACAGATAGGGCACGTCCAGGCTTTGGCGGTTATGGCGGGGGCGGCAGTTATGGTGGGAGCTATGATAGAAGTAACTATGGAGGTGATAATAACTTTAGGAGTCCAAGTTTTGGAAGCGGTGGTGATGGCTTTGGGGTCAGTGGGAATTATGGTGCTCCTGATGGTGCTGAGGGTAGTAACTACCAATTCAGTCAAAACTCAGGTGGAGGAGATCTTGGCTTTGAACCAAGTGGGAATTCAAGTATGGGAGATGATGTTGGCGAATTCGGTGGCAACCAAAATGAAGGAACTGGCCTAGACGATGAAGATGACTTGAAAGAGAACAAGGATGAAGACAACTTGAGAGAGAGCCGGTAG 705 0.4596 MAFINKIGKLLKHSAVKCISPEFSVCTPSIYQAIRSMSSAKLFIGGVSYSTDDMGLREAFASYGEIIDARVIMDRETGRSRGFGFITFASSEEASAAIQAMDGQDLHGRRIRVNYATDRARPGFGGYGGGGSYGGSYDRSNYGGDNNFRSPSFGSGGDGFGVSGNYGAPDGAEGSNYQFSQNSGGGDLGFEPSGNSSMGDDVGEFGGNQNEGTGLDDEDDLKENKDEDNLRESR 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01347 234 SUPERFAMILY RNA-binding domain, RBD 25 146 IPR035979 GO:0003676
Accr5g01347 234 SMART rrm1_1 41 114 IPR000504 GO:0003723
Accr5g01347 234 MobiDBLite consensus disorder prediction 174 190 - -
Accr5g01347 234 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Accr5g01347 234 Gene3D - 32 210 IPR012677 -
Accr5g01347 234 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 12 142 - -
Accr5g01347 234 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 37 198 - -
Accr5g01347 234 MobiDBLite consensus disorder prediction 164 234 - -
Accr5g01347 234 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Accr5g01347 234 CDD RRM2_NsCP33_like 41 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01347 Accr-Chr5 39375575 39377359 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01347 33 126 C2H2 Transcription Factor Family AT2G19380 32.979 1.22e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01347 K12741 - gmx:100818300 226.868