Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01346 ATGGCATTCATCAACAAGATTGGAAAGCTTCTCAAGCATTCTGCGGTCAAATGCATTAGCCCAGAATTTTCTGTATGTACTCCATCAATTTACCAGGCAATCAGGTCCATGTCATCTGCAAAGCTTTTTATTGGAGGTGTTTCATATAGCACAGACGATATGGGTCTGAGAGAAGCCTTTGCTAGCTATGGAGAGATAATTGATGCAAGGGTTATTATGGATCGTGAGACTGGAAGGTCCAGAGGATTTGGGTTCATAACTTTTGCATCCAGTGAAGAGGCATCTGCTGCTATTCAGGCAATGGATGGTCAGGATCTTCATGGGCGGAGGATACGGGTAAACTATGCTACAGATAGGGCACGTCCAGGCTTTGGCGGTGGTGGTGGGGGCGGGTATGGCGGGGGCGGGTACGGCGGAGGTGGTTATGGTGGGGGTGGGTATGGCGGGGGCGGTTATGGCGGGGGCGGCAGTTATGGTGGGAGCTATGATAGAAGTAACTATGGAGGTGATAATAACTTTAGGAGTCCAAGTTTTGGAAGCGGTGGTGATGGCTTTGGGGTCAGTGGGAATTATGGTGCTCCTGATGGTGCTGAGGGTAGTAACTACCAATTCAGTCAAAACTCAGGTGGAGGAGATCTTGGCTTTGAACCAAGTGGGAATTCAAGTATGGGAGATGATGTTGGCGAATTCGGTGGCAACCAAAATGAAGGAACTGGCCTAGACGATGAAGATGACTTGAAAGAGAACAAGGATGAAGACAACTTGAGAGAGAGCCGGTAG 780 0.4872 MAFINKIGKLLKHSAVKCISPEFSVCTPSIYQAIRSMSSAKLFIGGVSYSTDDMGLREAFASYGEIIDARVIMDRETGRSRGFGFITFASSEEASAAIQAMDGQDLHGRRIRVNYATDRARPGFGGGGGGGYGGGGYGGGGYGGGGYGGGGYGGGGSYGGSYDRSNYGGDNNFRSPSFGSGGDGFGVSGNYGAPDGAEGSNYQFSQNSGGGDLGFEPSGNSSMGDDVGEFGGNQNEGTGLDDEDDLKENKDEDNLRESR 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01346 259 SMART rrm1_1 41 114 IPR000504 GO:0003723
Accr5g01346 259 MobiDBLite consensus disorder prediction 189 259 - -
Accr5g01346 259 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 12 142 - -
Accr5g01346 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Accr5g01346 259 PRINTS Eggshell protein signature 184 202 - -
Accr5g01346 259 PRINTS Eggshell protein signature 127 142 - -
Accr5g01346 259 PRINTS Eggshell protein signature 36 52 - -
Accr5g01346 259 PRINTS Eggshell protein signature 152 162 - -
Accr5g01346 259 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 37 209 - -
Accr5g01346 259 MobiDBLite consensus disorder prediction 199 215 - -
Accr5g01346 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Accr5g01346 259 CDD RRM2_NsCP33_like 41 116 - -
Accr5g01346 259 Gene3D - 27 137 IPR012677 -
Accr5g01346 259 SUPERFAMILY RNA-binding domain, RBD 25 150 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01346 Accr-Chr5 39375575 39377359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01346 37 116 Eukaryotic Initiation Factors Gene Family AT3G16380 38.750 4.15e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01346 K12741 - gmx:100818300 214.157