Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01317 ATGGTAGCTACGGTGATGATGGGTTCAGAGAAAGCGTGGAAGAAAGGGCCTTGGACTCTTGAAGAGGATAAGCTGCTCAGTGAATATGTGAGCTTGCATGGTGAAGGAAGATGGAGTTCAGTGGCCAAGTTTACAGGGTTAAATAGGAGTGGGAAAAGTTGCAGGTTGAGGTGGGTGAATTATTTGAAGCCAGGCCTGAAGAAAGGTCACTTAACCCCTCAAGAAGAAGCCATCATATTTGAAATCCATGCTATGCTCGGTAACAAGTGGTCTACAATAGCAAAATATTTGCCTGGGAGAACAGACAATGAGATTAAGAACTACTGGAGGACCCACTTCAATAAGAAAGACAAATCCTCTCGTATTAGTAAGAGGCAAGAAAAGAGAAGATCAAGAATTCTAAAACAGATGAAACAACAGGAGCAGCAGCAACAACGACCGCCACCTCAACAGTACTATGATGTGCAAAGCAGTATGTTGTCGGCTCATGCAGAGTCAAACAATCAAATTATTACAAGCAACGTTTCTGTTGGGACTAATGTTCTAGAAGACAACTTCCACCCAGTAGTTGCCACCATGGAAGACCAATATAATTACTTGCCTTTCATGTTCCAAGATTATTTTCCATCACCGTGGCCTGAAACAACTGTAGAACAAGATGAAGGCTTGTTGGTTACGTTATGGAACCTCGACGAAGAAACAGTACAAGGTCATGGCGGAGACAATAAGTTCAACGAAAATAATGCCATTCATAACCAGATTACAACTTCTTGTTTCGATGATATTTCCAACAACCTCTGCCTTGCAAAGTACATGTCCGGCTGA 825 0.423 MVATVMMGSEKAWKKGPWTLEEDKLLSEYVSLHGEGRWSSVAKFTGLNRSGKSCRLRWVNYLKPGLKKGHLTPQEEAIIFEIHAMLGNKWSTIAKYLPGRTDNEIKNYWRTHFNKKDKSSRISKRQEKRRSRILKQMKQQEQQQQRPPPQQYYDVQSSMLSAHAESNNQIITSNVSVGTNVLEDNFHPVVATMEDQYNYLPFMFQDYFPSPWPETTVEQDEGLLVTLWNLDEETVQGHGGDNKFNENNAIHNQITTSCFDDISNNLCLAKYMSG 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01317 274 Coils Coil 123 144 - -
Accr5g01317 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Accr5g01317 274 Gene3D - 71 148 - -
Accr5g01317 274 Gene3D - 14 67 - -
Accr5g01317 274 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Accr5g01317 274 MobiDBLite consensus disorder prediction 137 151 - -
Accr5g01317 274 Pfam Myb-like DNA-binding domain 71 112 IPR001005 -
Accr5g01317 274 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Accr5g01317 274 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Accr5g01317 274 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Accr5g01317 274 CDD SANT 72 113 IPR001005 -
Accr5g01317 274 FunFam Myb transcription factor 15 67 - -
Accr5g01317 274 MobiDBLite consensus disorder prediction 115 151 - -
Accr5g01317 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 66 IPR017930 -
Accr5g01317 274 SMART sant 67 115 IPR001005 -
Accr5g01317 274 SMART sant 14 64 IPR001005 -
Accr5g01317 274 MobiDBLite consensus disorder prediction 117 132 - -
Accr5g01317 274 CDD SANT 17 62 IPR001005 -
Accr5g01317 274 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 10 172 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01317 Accr-Chr5 39054851 39055885 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01317 14 240 MYB Transcription Factor Family AT3G30210 49.785 4.03e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr5g01317 Myb_DNA-binding 2.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01317 K09422 - gmx:100785540 238.424