Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01312 ATGGGTTCTGTTTGTTGTTGTTTGAGTGCTGATGAATTTGAAGATTATGTAAATCGAAATAGTTCTGTATATAGGAACTGTGTGTGTCTCAATTGCTTCTTACAGAACTTTCAGAACGTGTATACAGCAATATTCCGCAGAGGGGAAGTGCACTCGCTTCCTTCATCTATACAGGGGGCAGCATCTATGACTTCTACAGCATCACTTGATAATTCGCTATCTGACATGTACCATTCTCCCCCAAGACCATTGCCTTATGATGTAGACCCCAGGCATTTCCGCTTTTCAAGACATGATAAAGGTTCTAGTCATTTGAATGAAGAGTCAGAACCTCTAAGAGGTGATGTAGATGGGGATCAAGAATCTTTAAGTTCAGGAGGCAAATGGAATGAATCTTCCTGTGAAGATGCATCAAAGGAATACAAATCTAAGTCCTTGGTGAGGCTCTCATCAGCAAAATATACAACTGGACCTGGGCTTGTTTATGCATCAGAGGAGGAGGAGGACGTATGCCCAACCTGTCTTGAAGAATACACTGAAGAGAACCCAAGGATATTGACAAAGTGCAGTCATCATTTTCATCTTAGTTGCATTTACGAATGGATGGAGAGAAGTGAAAACTGTCCAGTTTGTGGGAAGGTGATGTTATTCGATGAAACTTAA 663 0.4103 MGSVCCCLSADEFEDYVNRNSSVYRNCVCLNCFLQNFQNVYTAIFRRGEVHSLPSSIQGAASMTSTASLDNSLSDMYHSPPRPLPYDVDPRHFRFSRHDKGSSHLNEESEPLRGDVDGDQESLSSGGKWNESSCEDASKEYKSKSLVRLSSAKYTTGPGLVYASEEEEDVCPTCLEEYTEENPRILTKCSHHFHLSCIYEWMERSENCPVCGKVMLFDET 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01312 220 CDD RING-H2_AIRP1-like 167 215 - -
Accr5g01312 220 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 60 219 - -
Accr5g01312 220 SUPERFAMILY RING/U-box 165 217 - -
Accr5g01312 220 ProSiteProfiles Zinc finger RING-type profile. 171 211 IPR001841 -
Accr5g01312 220 MobiDBLite consensus disorder prediction 97 133 - -
Accr5g01312 220 MobiDBLite consensus disorder prediction 97 117 - -
Accr5g01312 220 SMART ring_2 171 211 IPR001841 -
Accr5g01312 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 216 IPR013083 -
Accr5g01312 220 FunFam E3 ubiquitin-protein ligase At3g02290-like 148 218 - -
Accr5g01312 220 Pfam RING-H2 zinc finger domain 165 211 IPR024766 GO:0008270
Accr5g01312 220 MobiDBLite consensus disorder prediction 72 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01312 Accr-Chr5 39003828 39007251 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01312 1 219 C3H Transcription Factor Family AT5G38895 59.545 7.47e-97 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01312 - - gmx:100788192 380.563