Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01299 ATGGCTAATAACTCTCAACTTCCGTCCCTCTTTTCCCTTGAAGATGAATTTGAAGAATCAGAACCCGATGAACAGGTATCTGATCTCCCATCACCCACTGCTCACGATCATTGGTGCACCGACTCCTCCAACCCCTTTGCTACCGTGTCCTTCGACCGTTTGAGCAACCATTCAAACTGGTATTCTGATTCGGACTCCGATTCGGTGAGTTGCTTTGTTACAGATCTTTTTGAAAATCGCTCGTCGGAGAAATTTAATCGTCGCTGTAACAATAGTTCTGATATCAATCCGTTTTCGGCCGTTCCTGGCGATGGTGGTCACGATGGAGAAGGGTCTAGTTATGCGGAGACGGAATTAGGGTCTGGATTTGGAACGGGAAAAAATGTTGAGATTTCTGCACTAGGCGAGGCATCGAGCGCTGAAAGGGTTCGTTCGCACACGGATGGTCTTCGAATTGTCGGGTTTAGTTCTGAGTCGGATTCAAATACTGATGAAGAGCTTGATAGGGCTATGGAATTCTGTTCTGGTGAAAATGATGGCAATAGAGTCAGTAGCTTTGACGATACTGATGTCCATTTTTGTTGGGACAGCCTTTGCTTGGATGATCAAAGGACTCTCAATTCTGAGTGGGAGGATTTAGAGGAAAGAGTCAATGAGGGAGAAGACTTGAGCGTGGTGATTGGCGAGGTTGATGATCAATCTGTAGCATCTGGATTTTCATATGGAGAAGAGTCGGGTGAAGAGGCATTCAGATACCTTGAATGGGAAATTCTGCTGGCGGTCAACAATTTAGAGAGGAATTCAAGCTTGGATCATGGCGCCACTGCAGGTTCCTTCCTAACTGTTCAGGATGATGGTTATATGAATACAGCTGAGTATGATATATTTTTTGGACAATTCATGGAAAATGAGAGTCCCTTAAAGGGTAGTCCTCCTACCGCTAAAAGTGTTATGGAGAATCTTCCTTTAGTAGAATTGACAGAGGAGGACTTGGTGGGGGAGAATGTAGCTTGTGCTGTTTGCAAAGATGAAATCATATGGAAGGAAAAAGTGAGAAGGCTTCCCTGCTCACACTTTTACCATGGGGACTGCATTATGCCATGGTTGAGCATTCGTAATACATGCCCTGTTTGTCGGTTTGAACTGCCCACAGATGATCCTGATTATGAGCAGAGGAAGAGTCAGAGAACTGCTCCTGATCTTTTTGAGTTTGCATTGTAG 1221 0.448 MANNSQLPSLFSLEDEFEESEPDEQVSDLPSPTAHDHWCTDSSNPFATVSFDRLSNHSNWYSDSDSDSVSCFVTDLFENRSSEKFNRRCNNSSDINPFSAVPGDGGHDGEGSSYAETELGSGFGTGKNVEISALGEASSAERVRSHTDGLRIVGFSSESDSNTDEELDRAMEFCSGENDGNRVSSFDDTDVHFCWDSLCLDDQRTLNSEWEDLEERVNEGEDLSVVIGEVDDQSVASGFSYGEESGEEAFRYLEWEILLAVNNLERNSSLDHGATAGSFLTVQDDGYMNTAEYDIFFGQFMENESPLKGSPPTAKSVMENLPLVELTEEDLVGENVACAVCKDEIIWKEKVRRLPCSHFYHGDCIMPWLSIRNTCPVCRFELPTDDPDYEQRKSQRTAPDLFEFAL 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01299 406 MobiDBLite consensus disorder prediction 1 37 - -
Accr5g01299 406 SMART ring_2 338 378 IPR001841 -
Accr5g01299 406 ProSiteProfiles Zinc finger RING-type profile. 338 379 IPR001841 -
Accr5g01299 406 FunFam E3 ubiquitin-protein ligase RING1-like 299 385 - -
Accr5g01299 406 Pfam Ring finger domain 338 379 IPR001841 -
Accr5g01299 406 SUPERFAMILY RING/U-box 319 386 - -
Accr5g01299 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 299 385 IPR013083 -
Accr5g01299 406 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 209 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01299 Accr-Chr5 38892054 38893274 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01299 149 394 C3H Transcription Factor Family AT3G02340 38.168 3.65e-45 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01299 - - pcin:129304768 662.529